SCOPe 2.08: Protein: Chitinase-3 like protein 1 (GP-39, YKL-40)

Lineage for Protein: Chitinase-3 like protein 1 (GP-39, YKL-40)

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.5: Type II chitinase [51534] (15 proteins)
glycosylase family 18
Protein Chitinase-3 like protein 1 (GP-39, YKL-40) [89482] (1 species)

Species:

Human (Homo sapiens) [TaxId:9606] [89483] (8 PDB entries)
1. Domains for 1hjv:
  1. Domain d1hjva1: 1hjv A:22-260,A:329-383 [83500]
    Other proteins in same PDB: d1hjva2, d1hjvb2, d1hjvc2, d1hjvd2
    complexed with nag, so4
  2. Domain d1hjvb1: 1hjv B:22-260,B:329-383 [83502]
    Other proteins in same PDB: d1hjva2, d1hjvb2, d1hjvc2, d1hjvd2
    complexed with nag, so4
  3. Domain d1hjvc1: 1hjv C:22-260,C:329-383 [83504]
    Other proteins in same PDB: d1hjva2, d1hjvb2, d1hjvc2, d1hjvd2
    complexed with nag, so4
  4. Domain d1hjvd1: 1hjv D:22-260,D:329-383 [83506]
    Other proteins in same PDB: d1hjva2, d1hjvb2, d1hjvc2, d1hjvd2
    complexed with nag, so4
2. Domains for 1hjw:
  1. Domain d1hjwa1: 1hjw A:22-260,A:329-383 [83508]
    Other proteins in same PDB: d1hjwa2, d1hjwb2
    complexed with gol, nag, so4
  2. Domain d1hjwb1: 1hjw B:22-260,B:329-383 [83510]
    Other proteins in same PDB: d1hjwa2, d1hjwb2
    complexed with gol, nag, so4
3. Domains for 1hjx:
  1. Domain d1hjxa1: 1hjx A:22-260,A:329-383 [83512]
    Other proteins in same PDB: d1hjxa2, d1hjxb2, d1hjxc2, d1hjxd2
    complexed with gol, so4
  2. Domain d1hjxb1: 1hjx B:22-260,B:329-383 [83514]
    Other proteins in same PDB: d1hjxa2, d1hjxb2, d1hjxc2, d1hjxd2
    complexed with gol, so4
  3. Domain d1hjxc1: 1hjx C:22-260,C:329-383 [83516]
    Other proteins in same PDB: d1hjxa2, d1hjxb2, d1hjxc2, d1hjxd2
    complexed with gol, so4
  4. Domain d1hjxd1: 1hjx D:22-260,D:329-383 [83518]
    Other proteins in same PDB: d1hjxa2, d1hjxb2, d1hjxc2, d1hjxd2
    complexed with gol, so4
4. Domains for 1nwr:
  1. Domain d1nwra1: 1nwr A:22-260,A:329-383 [92245]
    Other proteins in same PDB: d1nwra2, d1nwrb2, d1nwrc2, d1nwrd2
  2. Domain d1nwrb1: 1nwr B:22-260,B:329-383 [92247]
    Other proteins in same PDB: d1nwra2, d1nwrb2, d1nwrc2, d1nwrd2
  3. Domain d1nwrc1: 1nwr C:22-260,C:329-383 [92249]
    Other proteins in same PDB: d1nwra2, d1nwrb2, d1nwrc2, d1nwrd2
  4. Domain d1nwrd1: 1nwr D:22-260,D:329-383 [92251]
    Other proteins in same PDB: d1nwra2, d1nwrb2, d1nwrc2, d1nwrd2
5. Domains for 1nws:
  1. Domain d1nwsa1: 1nws A:22-260,A:329-383 [92253]
    Other proteins in same PDB: d1nwsa2, d1nwsb2, d1nwsc2, d1nwsd2
  2. Domain d1nwsb1: 1nws B:22-260,B:329-383 [92255]
    Other proteins in same PDB: d1nwsa2, d1nwsb2, d1nwsc2, d1nwsd2
  3. Domain d1nwsc1: 1nws C:22-260,C:329-383 [92257]
    Other proteins in same PDB: d1nwsa2, d1nwsb2, d1nwsc2, d1nwsd2
  4. Domain d1nwsd1: 1nws D:22-260,D:329-383 [92259]
    Other proteins in same PDB: d1nwsa2, d1nwsb2, d1nwsc2, d1nwsd2
6. Domains for 1nwt:
  1. Domain d1nwta1: 1nwt A:22-260,A:329-383 [92261]
    Other proteins in same PDB: d1nwta2, d1nwtb2, d1nwtc2, d1nwtd2
  2. Domain d1nwtb1: 1nwt B:22-260,B:329-383 [92263]
    Other proteins in same PDB: d1nwta2, d1nwtb2, d1nwtc2, d1nwtd2
  3. Domain d1nwtc1: 1nwt C:22-260,C:329-383 [92265]
    Other proteins in same PDB: d1nwta2, d1nwtb2, d1nwtc2, d1nwtd2
  4. Domain d1nwtd1: 1nwt D:22-260,D:329-383 [92267]
    Other proteins in same PDB: d1nwta2, d1nwtb2, d1nwtc2, d1nwtd2
7. Domains for 1nwu:
  1. Domain d1nwua1: 1nwu A:22-260,A:329-383 [92269]
    Other proteins in same PDB: d1nwua2, d1nwub2, d1nwuc2, d1nwud2
  2. Domain d1nwub1: 1nwu B:22-260,B:329-383 [92271]
    Other proteins in same PDB: d1nwua2, d1nwub2, d1nwuc2, d1nwud2
  3. Domain d1nwuc1: 1nwu C:22-260,C:329-383 [92273]
    Other proteins in same PDB: d1nwua2, d1nwub2, d1nwuc2, d1nwud2
  4. Domain d1nwud1: 1nwu D:22-260,D:329-383 [92275]
    Other proteins in same PDB: d1nwua2, d1nwub2, d1nwuc2, d1nwud2
8. Domains for 7cj2:
  1. Domain d7cj2a1: 7cj2 A:1-239,A:308-361 [417784]
    Other proteins in same PDB: d7cj2a2, d7cj2b2, d7cj2c_, d7cj2d_, d7cj2k_, d7cj2l_
    automated match to d1hjva1
    complexed with bma, nag
  2. Domain d7cj2b1: 7cj2 B:1-239,B:308-361 [417786]
    Other proteins in same PDB: d7cj2a2, d7cj2b2, d7cj2c_, d7cj2d_, d7cj2k_, d7cj2l_
    automated match to d1hjva1
    complexed with bma, nag

More info for Protein Chitinase-3 like protein 1 (GP-39, YKL-40) from c.1.8.5: Type II chitinase

Timeline for Protein Chitinase-3 like protein 1 (GP-39, YKL-40) from c.1.8.5: Type II chitinase:

Protein Chitinase-3 like protein 1 (GP-39, YKL-40) from c.1.8.5: Type II chitinase first appeared in SCOP 1.65
Protein Chitinase-3 like protein 1 (GP-39, YKL-40) from c.1.8.5: Type II chitinase appears in SCOPe 2.07