SCOPe 2.01: Protein: Isopentenyl-diphosphate delta-isomerase

Lineage for Protein: Isopentenyl-diphosphate delta-isomerase

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)
Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)
Protein Isopentenyl-diphosphate delta-isomerase [89454] (3 species)

Species:

Bacillus subtilis [TaxId:1423] [89455] (2 PDB entries)
1. Domains for 1p0k:
  1. Domain d1p0ka_: 1p0k A: [87648]
    complexed with po4
  2. Domain d1p0kb_: 1p0k B: [87649]
    complexed with po4
2. Domains for 1p0n:
  1. Domain d1p0na_: 1p0n A: [87651]
    complexed with fmn
  2. Domain d1p0nb_: 1p0n B: [87652]
    complexed with fmn
Thermus thermophilus HB8 [TaxId:300852] [159377] (1 PDB entry)
- Domains for 3dh7:
  1. Domain d3dh7a1: 3dh7 A:23-332 [157721]
    automatically matched to d1vcfa1
    complexed with fmn, pop
  2. Domain d3dh7b1: 3dh7 B:23-332 [157722]
    automatically matched to d1vcfa1
    complexed with fmn, pop
  3. Domain d3dh7c1: 3dh7 C:23-332 [157723]
    automatically matched to d1vcfa1
    complexed with fmn, pop
  4. Domain d3dh7d1: 3dh7 D:23-332 [157724]
    automatically matched to d1vcfa1
    complexed with fmn, pop
Thermus thermophilus [TaxId:274] [141760] (2 PDB entries)
Uniprot Q53W52 23-332
1. Domains for 1vcf:
  1. Domain d1vcfa1: 1vcf A:23-332 [119974]
    complexed with cd, fmn
  2. Domain d1vcfb1: 1vcf B:23-332 [119975]
    automatically matched to 1VCF A:23-332
    complexed with cd, fmn
2. Domains for 1vcg:
  1. Domain d1vcga1: 1vcg A:23-332 [119976]
    automatically matched to 1VCF A:23-332
    complexed with fmn
  2. Domain d1vcgb1: 1vcg B:23-332 [119977]
    automatically matched to 1VCF A:23-332
    complexed with fmn
  3. Domain d1vcgc1: 1vcg C:23-332 [119978]
    automatically matched to 1VCF A:23-332
    complexed with fmn
  4. Domain d1vcgd1: 1vcg D:23-332 [119979]
    automatically matched to 1VCF A:23-332
    complexed with fmn

More info for Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases

Timeline for Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases:

Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases first appeared in SCOP 1.65
Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases appears in SCOP 1.75
Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases appears in SCOPe 2.02
Protein Isopentenyl-diphosphate delta-isomerase from c.1.4.1: FMN-linked oxidoreductases appears in the current release, SCOPe 2.08