Lineage for Species: SARS coronavirus [TaxId: 227859]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2794584Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2794585Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2797303Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. 2797364Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (8 species)
    contains an extra alpha-helical domain
  7. 2797397Species SARS coronavirus [TaxId:227859] [89349] (86 PDB entries)

PDB entries in Species: SARS coronavirus [TaxId: 227859]:

  1. Domain(s) for 1q2w:
    1. 2797432Domain d1q2wa_: 1q2w A: [88355]
      Other proteins in same PDB: d1q2wb2
      complexed with mpd
      has additional subdomain(s) that are not in the common domain
    2. 2797433Domain d1q2wb1: 1q2w B:1-301 [88356]
      Other proteins in same PDB: d1q2wb2
      complexed with mpd
      has additional subdomain(s) that are not in the common domain
  2. Domain(s) for 1uj1:
    1. 2797429Domain d1uj1a_: 1uj1 A: [99450]
      has additional subdomain(s) that are not in the common domain
    2. 2797430Domain d1uj1b_: 1uj1 B: [99451]
      has additional subdomain(s) that are not in the common domain
  3. Domain(s) for 1uk2:
    1. 2797463Domain d1uk2a_: 1uk2 A: [99481]
      has additional subdomain(s) that are not in the common domain
    2. 2797464Domain d1uk2b_: 1uk2 B: [99482]
      has additional subdomain(s) that are not in the common domain
  4. Domain(s) for 1uk3:
    1. 2797483Domain d1uk3a_: 1uk3 A: [99483]
      has additional subdomain(s) that are not in the common domain
    2. 2797484Domain d1uk3b_: 1uk3 B: [99484]
      has additional subdomain(s) that are not in the common domain
  5. Domain(s) for 1uk4:
    1. 2797485Domain d1uk4a_: 1uk4 A: [99485]
      complexed with ato
      has additional subdomain(s) that are not in the common domain
    2. 2797486Domain d1uk4b_: 1uk4 B: [99486]
      complexed with ato
      has additional subdomain(s) that are not in the common domain
  6. Domain(s) for 1z1i:
    • 2797509Domain d1z1ia_: 1z1i A: [162356]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  7. Domain(s) for 1z1j:
    1. 2797506Domain d1z1ja_: 1z1j A: [162357]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797507Domain d1z1jb_: 1z1j B: [162358]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  8. Domain(s) for 2a5a:
    • 2797489Domain d2a5aa_: 2a5a A: [162692]
      automated match to d1uj1b_
      complexed with cl, edo
      has additional subdomain(s) that are not in the common domain
  9. Domain(s) for 2a5i:
    • 2797421Domain d2a5ia_: 2a5i A: [162693]
      automated match to d1uj1b_
      complexed with azp, edo, gol
      has additional subdomain(s) that are not in the common domain
  10. Domain(s) for 2a5k:
    1. 2797453Domain d2a5ka_: 2a5k A: [162694]
      automated match to d1uj1b_
      complexed with azp
      has additional subdomain(s) that are not in the common domain
    2. 2797454Domain d2a5kb_: 2a5k B: [162695]
      automated match to d1uj1b_
      complexed with azp
      has additional subdomain(s) that are not in the common domain
  11. Domain(s) for 2alv:
    • 2797469Domain d2alva1: 2alv A:2-301 [126982]
      automatically matched to d1q2wb_
      complexed with cy6
      has additional subdomain(s) that are not in the common domain
  12. Domain(s) for 2c3s:
    • 2797427Domain d2c3sa_: 2c3s A: [163241]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  13. Domain(s) for 2duc:
    1. 2797450Domain d2duca_: 2duc A: [146586]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
    2. 2797451Domain d2ducb_: 2duc B: [146587]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  14. Domain(s) for 2gt7:
    1. 2797407Domain d2gt7a_: 2gt7 A: [164833]
      automated match to d1uj1b_
      complexed with mes
      has additional subdomain(s) that are not in the common domain
    2. 2797408Domain d2gt7b_: 2gt7 B: [164834]
      automated match to d1uj1b_
      complexed with mes
      has additional subdomain(s) that are not in the common domain
  15. Domain(s) for 2gt8:
    • 2797422Domain d2gt8a_: 2gt8 A: [164835]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  16. Domain(s) for 2gtb:
    • 2797435Domain d2gtba_: 2gtb A: [164836]
      automated match to d1uj1b_
      complexed with acy, azp
      has additional subdomain(s) that are not in the common domain
  17. Domain(s) for 2gx4:
    • 2797470Domain d2gx4a_: 2gx4 A: [164869]
      automated match to d1uj1b_
      complexed with nol
      has additional subdomain(s) that are not in the common domain
  18. Domain(s) for 2gz7:
    • 2797420Domain d2gz7a_: 2gz7 A: [164878]
      automated match to d1uj1b_
      complexed with d3f
      has additional subdomain(s) that are not in the common domain
  19. Domain(s) for 2gz8:
    • 2797437Domain d2gz8a_: 2gz8 A: [164879]
      automated match to d1uj1b_
      complexed with f3f
      has additional subdomain(s) that are not in the common domain
  20. Domain(s) for 2gz9:
    • 2797456Domain d2gz9a_: 2gz9 A: [164880]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  21. Domain(s) for 2h2z:
    • 2797404Domain d2h2za_: 2h2z A: [164924]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  22. Domain(s) for 2hob:
    • 2797471Domain d2hoba_: 2hob A: [165177]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  23. Domain(s) for 2op9:
    1. 2797457Domain d2op9a2: 2op9 A:1-301 [148961]
      Other proteins in same PDB: d2op9a3
      automated match to d1q2wb_
      complexed with wr1
      has additional subdomain(s) that are not in the common domain
    2. 2797458Domain d2op9b_: 2op9 B: [148962]
      Other proteins in same PDB: d2op9a3
      automated match to d1q2wb_
      complexed with wr1
      has additional subdomain(s) that are not in the common domain
  24. Domain(s) for 2pwx:
    • 2797490Domain d2pwxa_: 2pwx A: [167318]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  25. Domain(s) for 2q6g:
    1. 2797475Domain d2q6ga_: 2q6g A: [167455]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797476Domain d2q6gb_: 2q6g B: [167456]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  26. Domain(s) for 2qc2:
    1. 2797511Domain d2qc2a1: 2qc2 A:1-304 [167515]
      Other proteins in same PDB: d2qc2a2
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797512Domain d2qc2b_: 2qc2 B: [167516]
      Other proteins in same PDB: d2qc2a2
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  27. Domain(s) for 2qcy:
    • 2797452Domain d2qcya_: 2qcy A: [167522]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  28. Domain(s) for 2qiq:
    • 2797439Domain d2qiqa2: 2qiq A:2-301 [150811]
      Other proteins in same PDB: d2qiqa3
      automated match to d1q2wb_
      complexed with cyv
      has additional subdomain(s) that are not in the common domain
  29. Domain(s) for 2v6n:
    • 2797477Domain d2v6na_: 2v6n A: [152716]
      automated match to d1uj1b_
      complexed with mes, so4, xp1
      has additional subdomain(s) that are not in the common domain
  30. Domain(s) for 2z3c:
    • 2797455Domain d2z3ca_: 2z3c A: [153983]
      automated match to d1uj1b_
      complexed with gol
      has additional subdomain(s) that are not in the common domain
  31. Domain(s) for 2z3d:
    • 2797488Domain d2z3da_: 2z3d A: [153984]
      automated match to d1uj1b_
      complexed with gol
      has additional subdomain(s) that are not in the common domain
  32. Domain(s) for 2z3e:
    • 2797501Domain d2z3ea_: 2z3e A: [153985]
      automated match to d1uj1b_
      complexed with gol
      has additional subdomain(s) that are not in the common domain
  33. Domain(s) for 2z94:
    • 2797405Domain d2z94a_: 2z94 A: [154232]
      automated match to d1uj1b_
      complexed with tld, zn
      has additional subdomain(s) that are not in the common domain
  34. Domain(s) for 2z9g:
    • 2797411Domain d2z9ga_: 2z9g A: [154241]
      automated match to d1uj1b_
      protein/RNA complex; complexed with bnz, hg
      has additional subdomain(s) that are not in the common domain
  35. Domain(s) for 2z9j:
    1. 2797425Domain d2z9ja_: 2z9j A: [154254]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, dtz
      has additional subdomain(s) that are not in the common domain
    2. 2797426Domain d2z9jb_: 2z9j B: [154255]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, dtz
      has additional subdomain(s) that are not in the common domain
  36. Domain(s) for 2z9k:
    1. 2797416Domain d2z9ka_: 2z9k A: [154256]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, doz
      has additional subdomain(s) that are not in the common domain
    2. 2797417Domain d2z9kb_: 2z9k B: [154257]
      automated match to d1uj1b_
      protein/RNA complex; complexed with dms, doz
      has additional subdomain(s) that are not in the common domain
  37. Domain(s) for 2z9l:
    1. 2797448Domain d2z9la_: 2z9l A: [154258]
      automated match to d1uj1b_
      complexed with daz, dms
      has additional subdomain(s) that are not in the common domain
    2. 2797449Domain d2z9lb_: 2z9l B: [154259]
      automated match to d1uj1b_
      complexed with daz, dms
      has additional subdomain(s) that are not in the common domain
  38. Domain(s) for 2zu4:
    • 2797446Domain d2zu4a_: 2zu4 A: [171528]
      automated match to d1uj1b_
      complexed with zu3
      has additional subdomain(s) that are not in the common domain
  39. Domain(s) for 2zu5:
    • 2797434Domain d2zu5a_: 2zu5 A: [171529]
      automated match to d1uj1b_
      complexed with zu5
      has additional subdomain(s) that are not in the common domain
  40. Domain(s) for 3atw:
    1. 2797499Domain d3atwa_: 3atw A: [172333]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
    2. 2797500Domain d3atwb_: 3atw B: [172334]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  41. Domain(s) for 3avz:
    • 2797508Domain d3avza_: 3avz A: [172358]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  42. Domain(s) for 3aw0:
    • 2797498Domain d3aw0a_: 3aw0 A: [172359]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  43. Domain(s) for 3aw1:
    1. 2797466Domain d3aw1a_: 3aw1 A: [172360]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797467Domain d3aw1b_: 3aw1 B: [172361]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  44. Domain(s) for 3d62:
    • 2797510Domain d3d62a_: 3d62 A: [157411]
      automated match to d1q2wb_
      complexed with 959
      has additional subdomain(s) that are not in the common domain
  45. Domain(s) for 3f9e:
    • 2797495Domain d3f9ea_: 3f9e A: [175590]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  46. Domain(s) for 3f9f:
    1. 2797461Domain d3f9fa_: 3f9f A: [175591]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797462Domain d3f9fb_: 3f9f B: [175592]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  47. Domain(s) for 3f9g:
    1. 2797491Domain d3f9ga_: 3f9g A: [175593]
      automated match to d1q2wb_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797492Domain d3f9gb_: 3f9g B: [175594]
      automated match to d1q2wb_
      mutant
      has additional subdomain(s) that are not in the common domain
  48. Domain(s) for 3f9h:
    1. 2797503Domain d3f9ha_: 3f9h A: [175595]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797504Domain d3f9hb_: 3f9h B: [175596]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  49. Domain(s) for 3fzd:
    • 2797502Domain d3fzda_: 3fzd A: [176209]
      automated match to d1q2wb_
      mutant
      has additional subdomain(s) that are not in the common domain
  50. Domain(s) for 3m3s:
    1. 2797459Domain d3m3sa_: 3m3s A: [180804]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797460Domain d3m3sb_: 3m3s B: [180805]
      automated match to d1uj1b_
      mutant
      has additional subdomain(s) that are not in the common domain
  51. Domain(s) for 3sn8:
    • 2797447Domain d3sn8a_: 3sn8 A: [185443]
      automated match to d1uj1b_
      complexed with s89
      has additional subdomain(s) that are not in the common domain
  52. Domain(s) for 3sna:
    • 2797505Domain d3snaa_: 3sna A: [249529]
      automated match to d2q6gb_
      has additional subdomain(s) that are not in the common domain
  53. Domain(s) for 3snb:
    • 2797472Domain d3snba_: 3snb A: [185444]
      automated match to d1uj1b_
      has additional subdomain(s) that are not in the common domain
  54. Domain(s) for 3snc:
    • 2797493Domain d3snca_: 3snc A: [185445]
      automated match to d1uj1b_
      complexed with dms
      has additional subdomain(s) that are not in the common domain
  55. Domain(s) for 3snd:
    1. 2797418Domain d3snda_: 3snd A: [185446]
      automated match to d1uj1b_
      complexed with mrd
      has additional subdomain(s) that are not in the common domain
    2. 2797419Domain d3sndb_: 3snd B: [185447]
      automated match to d1uj1b_
      complexed with mrd
      has additional subdomain(s) that are not in the common domain
  56. Domain(s) for 3sne:
    • 2797481Domain d3snea_: 3sne A: [185448]
      automated match to d1uj1b_
      complexed with mes
      has additional subdomain(s) that are not in the common domain
  57. Domain(s) for 3szn:
    • 2797444Domain d3szna_: 3szn A: [216623]
      automated match to d2duca_
      complexed with g75
      has additional subdomain(s) that are not in the common domain
  58. Domain(s) for 3tit:
    • 2797479Domain d3tita_: 3tit A: [216831]
      automated match to d2duca_
      complexed with g81
      has additional subdomain(s) that are not in the common domain
  59. Domain(s) for 3tiu:
    • 2797487Domain d3tiua_: 3tiu A: [216832]
      automated match to d2duca_
      complexed with dms, g82
      has additional subdomain(s) that are not in the common domain
  60. Domain(s) for 3tns:
    • 2797480Domain d3tnsa_: 3tns A: [216906]
      automated match to d2duca_
      complexed with g83
      has additional subdomain(s) that are not in the common domain
  61. Domain(s) for 3tnt:
    • 2797424Domain d3tnta_: 3tnt A: [193531]
      automated match to d1z1ja_
      complexed with g85
      has additional subdomain(s) that are not in the common domain
  62. Domain(s) for 3v3m:
    • 2797423Domain d3v3ma_: 3v3m A: [217630]
      automated match to d2duca_
      complexed with 0en, dms
      has additional subdomain(s) that are not in the common domain
  63. Domain(s) for 3vb3:
    1. 2797442Domain d3vb3a_: 3vb3 A: [217737]
      automated match to d1uj1b_
      complexed with edo, peg
      has additional subdomain(s) that are not in the common domain
    2. 2797443Domain d3vb3b_: 3vb3 B: [217738]
      automated match to d2duca_
      complexed with edo, peg
      has additional subdomain(s) that are not in the common domain
  64. Domain(s) for 4hi3:
    1. 2797440Domain d4hi3a_: 4hi3 A: [196960]
      automated match to d1z1ja_
      mutant
      has additional subdomain(s) that are not in the common domain
    2. 2797441Domain d4hi3b_: 4hi3 B: [197388]
      automated match to d1z1ja_
      mutant
      has additional subdomain(s) that are not in the common domain
  65. Domain(s) for 4mds:
    • 2797406Domain d4mdsa1: 4mds A:1-302 [228110]
      Other proteins in same PDB: d4mdsa2
      automated match to d3tnta_
      complexed with 23h, dms
      has additional subdomain(s) that are not in the common domain
  66. Domain(s) for 4tww:
    1. 2797496Domain d4twwa_: 4tww A: [309672]
      automated match to d1z1ja_
      complexed with 3a7
      has additional subdomain(s) that are not in the common domain
    2. 2797497Domain d4twwb_: 4tww B: [309673]
      automated match to d1z1ja_
      complexed with 3a7
      has additional subdomain(s) that are not in the common domain
  67. Domain(s) for 4twx:
    • 2797478Domain d4twxa_: 4twx A: [309674]
      automated match to d1z1ja_
      complexed with 3a4
      has additional subdomain(s) that are not in the common domain
  68. Domain(s) for 4twy:
    • 2797428Domain d4twya_: 4twy A: [309675]
      automated match to d1z1ja_
      complexed with 3bl
      has additional subdomain(s) that are not in the common domain
  69. Domain(s) for 4wy3:
    • 2797465Domain d4wy3a_: 4wy3 A: [309925]
      automated match to d1z1ja_
      complexed with 3x5
      has additional subdomain(s) that are not in the common domain
  70. Domain(s) for 5c5n:
    • 2797445Domain d5c5na_: 5c5n A: [318789]
      automated match to d1z1ja_
      complexed with slh
      has additional subdomain(s) that are not in the common domain
  71. Domain(s) for 5c5o:
    1. 2797414Domain d5c5oa_: 5c5o A: [318687]
      automated match to d1z1ja_
      complexed with sdj
      has additional subdomain(s) that are not in the common domain
    2. 2797415Domain d5c5ob_: 5c5o B: [318792]
      automated match to d1z1ja_
      complexed with sdj
      has additional subdomain(s) that are not in the common domain
  72. Domain(s) for 5n19:
    • 2797431Domain d5n19a_: 5n19 A: [346613]
      automated match to d1uj1b_
      complexed with d03, dms
      has additional subdomain(s) that are not in the common domain
  73. Domain(s) for 5n5o:
    • 2797482Domain d5n5oa_: 5n5o A: [346868]
      automated match to d1uj1b_
      complexed with 8o5
      has additional subdomain(s) that are not in the common domain
  74. Domain(s) for 6lnq:
    • 2797474Domain d6lnqa_: 6lnq A: [386142]
      automated match to d1uj1b_
      complexed with ejf
      has additional subdomain(s) that are not in the common domain
  75. Domain(s) for 6lny:
    • 2797494Domain d6lnya_: 6lny A: [386135]
      automated match to d1uj1b_
      complexed with eoc
      has additional subdomain(s) that are not in the common domain
  76. Domain(s) for 6lo0:
    • 2797473Domain d6lo0a_: 6lo0 A: [386136]
      automated match to d1uj1b_
      complexed with eof
      has additional subdomain(s) that are not in the common domain
  77. Domain(s) for 6w2a:
    1. 2797409Domain d6w2aa1: 6w2a A:1-301 [392854]
      Other proteins in same PDB: d6w2aa2, d6w2ab2
      automated match to d1z1ja_
      complexed with qys, vdj
      has additional subdomain(s) that are not in the common domain
    2. 2797410Domain d6w2ab1: 6w2a B:1-302 [392852]
      Other proteins in same PDB: d6w2aa2, d6w2ab2
      automated match to d1z1ja_
      complexed with qys, vdj
      has additional subdomain(s) that are not in the common domain
  78. Domain(s) for 6xhl:
    1. 2797402Domain d6xhla_: 6xhl A: [389142]
      automated match to d1z1ja_
      complexed with v2m
      has additional subdomain(s) that are not in the common domain
    2. 2797403Domain d6xhlb_: 6xhl B: [389093]
      automated match to d1z1ja_
      complexed with v2m
      has additional subdomain(s) that are not in the common domain
  79. Domain(s) for 6xhn:
    1. 2797398Domain d6xhna_: 6xhn A: [389069]
      automated match to d1z1ja_
      complexed with edo, v3d
      has additional subdomain(s) that are not in the common domain
    2. 2797399Domain d6xhnb_: 6xhn B: [389102]
      automated match to d1z1ja_
      complexed with edo, v3d
      has additional subdomain(s) that are not in the common domain
  80. Domain(s) for 6xho:
    1. 2797400Domain d6xhoa_: 6xho A: [389117]
      automated match to d1z1ja_
      complexed with edo, v34
      has additional subdomain(s) that are not in the common domain
    2. 2797401Domain d6xhob_: 6xho B: [389088]
      automated match to d1z1ja_
      complexed with edo, v34
      has additional subdomain(s) that are not in the common domain
  81. Domain(s) for 7dqz:
    1. 3085021Domain d7dqzb_: 7dqz B: [421338]
      automated match to d1z1ja_
    2. 3085052Domain d7dqza_: 7dqz A: [421369]
      automated match to d1z1ja_
  82. Domain(s) for 7eo8:
    1. 3085424Domain d7eo8a_: 7eo8 A: [421741]
      automated match to d1z1ja_
      complexed with fno
    2. 3085426Domain d7eo8b_: 7eo8 B: [421743]
      automated match to d1z1ja_
      complexed with fno
  83. Domain(s) for 7k0g:
  84. Domain(s) for 7k0h:
    1. 2797412Domain d7k0ha_: 7k0h A: [418210]
      automated match to d1z1ja_
      complexed with cl, pg4, vr4
    2. 2797413Domain d7k0hb_: 7k0h B: [418211]
      automated match to d1z1ja_
      complexed with cl, pg4, vr4
  85. Domain(s) for 7lcp:
    • 2797436Domain d7lcpa_: 7lcp A: [403411]
      automated match to d1uj1b_
      complexed with ca, edo, ued
      has additional subdomain(s) that are not in the common domain
  86. Domain(s) for 7lcq:
    • 2797468Domain d7lcqa_: 7lcq A: [403444]
      automated match to d1uj1b_
      complexed with edo, ued
      has additional subdomain(s) that are not in the common domain

More info for Species SARS coronavirus [TaxId:227859] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)

Timeline for Species SARS coronavirus [TaxId:227859] from b.47.1.4 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2):