SCOPe 2.06: Protein: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI

Lineage for Protein: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families)

there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules

Family c.36.1.12: PFOR PP module [88771] (1 protein)
domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains
Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI [88772] (1 species)

Species:

Desulfovibrio africanus [TaxId:873] [88773] (10 PDB entries)

Domains for 1b0p:
1. Domain d1b0pa2: 1b0p A:786-1232 [31832]
  Other proteins in same PDB: d1b0pa1, d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb1, d1b0pb3, d1b0pb4, d1b0pb5
  complexed with ca, mg, sf4, tpp
2. Domain d1b0pb2: 1b0p B:786-1232 [31834]
  Other proteins in same PDB: d1b0pa1, d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb1, d1b0pb3, d1b0pb4, d1b0pb5
  complexed with ca, mg, sf4, tpp
Domains for 1kek:
1. Domain d1keka2: 1kek A:786-1232 [68525]
  Other proteins in same PDB: d1keka1, d1keka3, d1keka4, d1keka5, d1kekb1, d1kekb3, d1kekb4, d1kekb5
  complexed with ca, co2, htl, mg, sf4
2. Domain d1kekb2: 1kek B:786-1232 [68530]
  Other proteins in same PDB: d1keka1, d1keka3, d1keka4, d1keka5, d1kekb1, d1kekb3, d1kekb4, d1kekb5
  complexed with ca, co2, htl, mg, sf4

Domains for 2c3m:

Domain d2c3ma2: 2c3m A:786-1232 [129741]
Other proteins in same PDB: d2c3ma1, d2c3ma3, d2c3ma4, d2c3ma5, d2c3mb1, d2c3mb3, d2c3mb4, d2c3mb5
automated match to d1keka2
complexed with ca, cl, mg, sf4, tpp

Domain d2c3mb2: 2c3m B:786-1232 [129746]
Other proteins in same PDB: d2c3ma1, d2c3ma3, d2c3ma4, d2c3ma5, d2c3mb1, d2c3mb3, d2c3mb4, d2c3mb5
automated match to d1keka2
complexed with ca, cl, mg, sf4, tpp

Domains for 2c3o:

Domain d2c3oa2: 2c3o A:786-1232 [129751]
Other proteins in same PDB: d2c3oa1, d2c3oa3, d2c3oa4, d2c3oa5, d2c3ob1, d2c3ob3, d2c3ob4, d2c3ob5
automated match to d1keka2
complexed with ca, mg, pyr, sf4, tpp

Domain d2c3ob2: 2c3o B:786-1232 [129756]
Other proteins in same PDB: d2c3oa1, d2c3oa3, d2c3oa4, d2c3oa5, d2c3ob1, d2c3ob3, d2c3ob4, d2c3ob5
automated match to d1keka2
complexed with ca, mg, pyr, sf4, tpp

Domains for 2c3p:
1. Domain d2c3pa2: 2c3p A:786-1232 [129761]
  Other proteins in same PDB: d2c3pa1, d2c3pa3, d2c3pa4, d2c3pa5, d2c3pb1, d2c3pb3, d2c3pb4, d2c3pb5
  automated match to d1keka2
  complexed with 1tp, ca, mg, sf4
2. Domain d2c3pb2: 2c3p B:786-1232 [129766]
  Other proteins in same PDB: d2c3pa1, d2c3pa3, d2c3pa4, d2c3pa5, d2c3pb1, d2c3pb3, d2c3pb4, d2c3pb5
  automated match to d1keka2
  complexed with 1tp, ca, mg, sf4

Domains for 2c3u:

Domain d2c3ua2: 2c3u A:786-1232 [129771]
Other proteins in same PDB: d2c3ua1, d2c3ua3, d2c3ua4, d2c3ua5, d2c3ub1, d2c3ub3, d2c3ub4, d2c3ub5
automated match to d1keka2
complexed with 2tp, ca, mg, pyr, sf4

Domain d2c3ub2: 2c3u B:786-1232 [129776]
Other proteins in same PDB: d2c3ua1, d2c3ua3, d2c3ua4, d2c3ua5, d2c3ub1, d2c3ub3, d2c3ub4, d2c3ub5
automated match to d1keka2
complexed with 2tp, ca, mg, pyr, sf4

Domains for 2c3y:

Domain d2c3ya2: 2c3y A:786-1232 [129781]
Other proteins in same PDB: d2c3ya1, d2c3ya3, d2c3ya4, d2c3ya5, d2c3yb1, d2c3yb3, d2c3yb4, d2c3yb5
automated match to d1keka2
complexed with ca, co2, htl, mg, sf4

Domain d2c3yb2: 2c3y B:786-1231 [129786]
Other proteins in same PDB: d2c3ya1, d2c3ya3, d2c3ya4, d2c3ya5, d2c3yb1, d2c3yb3, d2c3yb4, d2c3yb5
automated match to d1keka2
complexed with ca, co2, htl, mg, sf4

Domains for 2c42:

Domain d2c42a2: 2c42 A:786-1232 [129791]
Other proteins in same PDB: d2c42a1, d2c42a3, d2c42a4, d2c42a5, d2c42b1, d2c42b3, d2c42b4, d2c42b5
automated match to d1keka2
complexed with ca, mg, pyr, sf4, tpp

Domain d2c42b2: 2c42 B:786-1232 [129796]
Other proteins in same PDB: d2c42a1, d2c42a3, d2c42a4, d2c42a5, d2c42b1, d2c42b3, d2c42b4, d2c42b5
automated match to d1keka2
complexed with ca, mg, pyr, sf4, tpp

Domains for 2pda:
1. Domain d2pdaa2: 2pda A:786-1232 [31836]
  Other proteins in same PDB: d2pdaa1, d2pdaa3, d2pdaa4, d2pdaa5, d2pdab1, d2pdab3, d2pdab4, d2pdab5
  complexed with ca, mg, pyr, sf4, tpp
2. Domain d2pdab2: 2pda B:786-1232 [31838]
  Other proteins in same PDB: d2pdaa1, d2pdaa3, d2pdaa4, d2pdaa5, d2pdab1, d2pdab3, d2pdab4, d2pdab5
  complexed with ca, mg, pyr, sf4, tpp

Domains for 2uza:

Domain d2uzaa2: 2uza A:786-1232 [152326]
Other proteins in same PDB: d2uzaa1, d2uzaa3, d2uzaa4, d2uzaa5, d2uzab1, d2uzab3, d2uzab4, d2uzab5
automated match to d1keka2
complexed with ca, co2, htl, mg, sf4

Domain d2uzab2: 2uza B:786-1232 [152331]
Other proteins in same PDB: d2uzaa1, d2uzaa3, d2uzaa4, d2uzaa5, d2uzab1, d2uzab3, d2uzab4, d2uzab5
automated match to d1keka2
complexed with ca, co2, htl, mg, sf4

More info for Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module

Timeline for Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module:

Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module first appeared in SCOP 1.65
Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module appears in SCOPe 2.05
Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module appears in SCOPe 2.07
Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI from c.36.1.12: PFOR PP module appears in the current release, SCOPe 2.08