Lineage for Species: Baker's yeast (Saccharomyces cerevisiae)

  1. Root: SCOP 1.71
  2. 570216Class c: Alpha and beta proteins (a/b) [51349] (134 folds)
  3. 581036Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 581037Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 581307Family c.36.1.10: TK-like PP module [88760] (2 proteins)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 581314Protein Transketolase (TK), PP module [88761] (4 species)
  7. 581315Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [88762] (7 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae):

  1. Domain(s) for 1ay0:
    1. 581328Domain d1ay0a1: 1ay0 A:3-337 [31823]
      Other proteins in same PDB: d1ay0a2, d1ay0a3, d1ay0b2, d1ay0b3
    2. 581329Domain d1ay0b1: 1ay0 B:3-337 [31825]
      Other proteins in same PDB: d1ay0a2, d1ay0a3, d1ay0b2, d1ay0b3
      complexed with ca, tpp; mutant
  2. Domain(s) for 1gpu:
    1. 581316Domain d1gpua1: 1gpu A:3-337 [65454]
      Other proteins in same PDB: d1gpua2, d1gpua3, d1gpub2, d1gpub3
    2. 581317Domain d1gpub1: 1gpu B:3-337 [65457]
      Other proteins in same PDB: d1gpua2, d1gpua3, d1gpub2, d1gpub3
      complexed with ca, thd
  3. Domain(s) for 1ngs:
    1. 581322Domain d1ngsa1: 1ngs A:3-337 [31819]
      Other proteins in same PDB: d1ngsa2, d1ngsa3, d1ngsb2, d1ngsb3
    2. 581323Domain d1ngsb1: 1ngs B:3-337 [31821]
      Other proteins in same PDB: d1ngsa2, d1ngsa3, d1ngsb2, d1ngsb3
      complexed with ca, e4p, tpp
  4. Domain(s) for 1tka:
    1. 581324Domain d1tkaa1: 1tka A:3-337 [31815]
      Other proteins in same PDB: d1tkaa2, d1tkaa3, d1tkab2, d1tkab3
    2. 581325Domain d1tkab1: 1tka B:3-337 [31817]
      Other proteins in same PDB: d1tkaa2, d1tkaa3, d1tkab2, d1tkab3
      complexed with ca, n3t
  5. Domain(s) for 1tkb:
    1. 581318Domain d1tkba1: 1tkb A:3-337 [31807]
      Other proteins in same PDB: d1tkba2, d1tkba3, d1tkbb2, d1tkbb3
    2. 581319Domain d1tkbb1: 1tkb B:3-337 [31809]
      Other proteins in same PDB: d1tkba2, d1tkba3, d1tkbb2, d1tkbb3
      complexed with ca, n1t
  6. Domain(s) for 1tkc:
    1. 581326Domain d1tkca1: 1tkc A:3-337 [31811]
      Other proteins in same PDB: d1tkca2, d1tkca3, d1tkcb2, d1tkcb3
    2. 581327Domain d1tkcb1: 1tkc B:3-337 [31813]
      Other proteins in same PDB: d1tkca2, d1tkca3, d1tkcb2, d1tkcb3
      complexed with ca, m6t
  7. Domain(s) for 1trk:
    1. 581320Domain d1trka1: 1trk A:3-337 [31803]
      Other proteins in same PDB: d1trka2, d1trka3, d1trkb2, d1trkb3
    2. 581321Domain d1trkb1: 1trk B:3-337 [31805]
      Other proteins in same PDB: d1trka2, d1trka3, d1trkb2, d1trkb3
      complexed with ca, tpp

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.10 Transketolase (TK), PP module

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from c.36.1.10 Transketolase (TK), PP module: