Lineage for Species: Desulfovibrio africanus

  1. Root: SCOP 1.65
  2. 305035Class c: Alpha and beta proteins (a/b) [51349] (121 folds)
  3. 312976Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 312977Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 313075Family c.36.1.8: PFOR Pyr module [88746] (1 protein)
    domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains
  6. 313076Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domain I [88747] (1 species)
  7. 313077Species Desulfovibrio africanus [TaxId:873] [88748] (3 PDB entries)

PDB entries in Species: Desulfovibrio africanus:

  1. Domain(s) for 1b0p:
    1. 313080Domain d1b0pa1: 1b0p A:2-258 [31831]
      Other proteins in same PDB: d1b0pa2, d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb2, d1b0pb3, d1b0pb4, d1b0pb5
    2. 313081Domain d1b0pb1: 1b0p B:2-258 [31833]
      Other proteins in same PDB: d1b0pa2, d1b0pa3, d1b0pa4, d1b0pa5, d1b0pb2, d1b0pb3, d1b0pb4, d1b0pb5
      complexed with ca, fs4, mg, tpp
  2. Domain(s) for 1kek:
    1. 313078Domain d1keka1: 1kek A:2-258 [68524]
      Other proteins in same PDB: d1keka2, d1keka3, d1keka4, d1keka5, d1kekb2, d1kekb3, d1kekb4, d1kekb5
    2. 313079Domain d1kekb1: 1kek B:2-258 [68529]
      Other proteins in same PDB: d1keka2, d1keka3, d1keka4, d1keka5, d1kekb2, d1kekb3, d1kekb4, d1kekb5
      complexed with ca, co2, fs4, htl, mg
  3. Domain(s) for 2pda:
    1. 313082Domain d2pdaa1: 2pda A:2-258 [31835]
      Other proteins in same PDB: d2pdaa2, d2pdaa3, d2pdaa4, d2pdaa5, d2pdab2, d2pdab3, d2pdab4, d2pdab5
    2. 313083Domain d2pdab1: 2pda B:2-258 [31837]
      Other proteins in same PDB: d2pdaa2, d2pdaa3, d2pdaa4, d2pdaa5, d2pdab2, d2pdab3, d2pdab4, d2pdab5
      complexed with ca, fs4, mg, pyr, tpp

More info for Species Desulfovibrio africanus [TaxId:873] from c.36.1.8 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I

Timeline for Species Desulfovibrio africanus [TaxId:873] from c.36.1.8 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I: