Lineage for Species: Pseudomonas putida [TaxId: 303]

  1. Root: SCOP 1.73
  2. 681097Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
  3. 694610Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 694611Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 694773Family c.36.1.7: Branched-chain alpha-keto acid dehydrogenase Pyr module [88741] (4 proteins)
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  6. 694774Protein 2-oxoisovalerate dehydrogenase (E1B), Pyr module [88744] (1 species)
    chain A is alpha-subunit and chain B is beta-subunit
  7. 694775Species Pseudomonas putida [TaxId:303] [88745] (2 PDB entries)

PDB entries in Species: Pseudomonas putida [TaxId: 303]:

  1. Domain(s) for 1qs0:
  2. Domain(s) for 2bp7:
    1. 694777Domain d2bp7b1: 2bp7 B:2-205 [128927]
      Other proteins in same PDB: d2bp7a1, d2bp7b2, d2bp7c1, d2bp7d2, d2bp7e1, d2bp7f2, d2bp7g1, d2bp7h2
      automatically matched to d1qs0b1
    2. 694778Domain d2bp7d1: 2bp7 D:2-205 [128930]
      Other proteins in same PDB: d2bp7a1, d2bp7b2, d2bp7c1, d2bp7d2, d2bp7e1, d2bp7f2, d2bp7g1, d2bp7h2
      automatically matched to d1qs0b1
    3. 694779Domain d2bp7f1: 2bp7 F:2-205 [128933]
      Other proteins in same PDB: d2bp7a1, d2bp7b2, d2bp7c1, d2bp7d2, d2bp7e1, d2bp7f2, d2bp7g1, d2bp7h2
      automatically matched to d1qs0b1
    4. 694780Domain d2bp7h1: 2bp7 H:2-205 [128936]
      Other proteins in same PDB: d2bp7a1, d2bp7b2, d2bp7c1, d2bp7d2, d2bp7e1, d2bp7f2, d2bp7g1, d2bp7h2
      automatically matched to d1qs0b1

More info for Species Pseudomonas putida [TaxId:303] from c.36.1.7 2-oxoisovalerate dehydrogenase (E1B), Pyr module

Timeline for Species Pseudomonas putida [TaxId:303] from c.36.1.7 2-oxoisovalerate dehydrogenase (E1B), Pyr module: