Lineage for Protein: Transketolase (TK), Pyr module

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1361462Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1361463Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 1361611Family c.36.1.6: TK-like Pyr module [88735] (2 proteins)
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  6. 1361630Protein Transketolase (TK), Pyr module [88736] (4 species)

Species:

  1. 1361631Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [88737] (7 PDB entries)
    1. Domains for 1ay0:
      1. 1361644Domain d1ay0a2: 1ay0 A:338-534 [31824]
        Other proteins in same PDB: d1ay0a1, d1ay0a3, d1ay0b1, d1ay0b3
        complexed with ca, tpp
      2. 1361645Domain d1ay0b2: 1ay0 B:338-534 [31826]
        Other proteins in same PDB: d1ay0a1, d1ay0a3, d1ay0b1, d1ay0b3
        complexed with ca, tpp
    2. Domains for 1gpu:
      1. 1361632Domain d1gpua2: 1gpu A:338-534 [65455]
        Other proteins in same PDB: d1gpua1, d1gpua3, d1gpub1, d1gpub3
        complexed with ca, thd
      2. 1361633Domain d1gpub2: 1gpu B:338-534 [65458]
        Other proteins in same PDB: d1gpua1, d1gpua3, d1gpub1, d1gpub3
        complexed with ca, thd
    3. Domains for 1ngs:
      1. 1361642Domain d1ngsa2: 1ngs A:338-534 [31820]
        Other proteins in same PDB: d1ngsa1, d1ngsa3, d1ngsb1, d1ngsb3
        complexed with ca, e4p, tpp
      2. 1361643Domain d1ngsb2: 1ngs B:338-534 [31822]
        Other proteins in same PDB: d1ngsa1, d1ngsa3, d1ngsb1, d1ngsb3
        complexed with ca, e4p, tpp
    4. Domains for 1tka:
      1. 1361640Domain d1tkaa2: 1tka A:338-534 [31816]
        Other proteins in same PDB: d1tkaa1, d1tkaa3, d1tkab1, d1tkab3
        complexed with ca, n3t
      2. 1361641Domain d1tkab2: 1tka B:338-534 [31818]
        Other proteins in same PDB: d1tkaa1, d1tkaa3, d1tkab1, d1tkab3
        complexed with ca, n3t
    5. Domains for 1tkb:
      1. 1361636Domain d1tkba2: 1tkb A:338-534 [31808]
        Other proteins in same PDB: d1tkba1, d1tkba3, d1tkbb1, d1tkbb3
        complexed with ca, n1t
      2. 1361637Domain d1tkbb2: 1tkb B:338-534 [31810]
        Other proteins in same PDB: d1tkba1, d1tkba3, d1tkbb1, d1tkbb3
        complexed with ca, n1t
    6. Domains for 1tkc:
      1. 1361638Domain d1tkca2: 1tkc A:338-534 [31812]
        Other proteins in same PDB: d1tkca1, d1tkca3, d1tkcb1, d1tkcb3
        complexed with ca, m6t
      2. 1361639Domain d1tkcb2: 1tkc B:338-534 [31814]
        Other proteins in same PDB: d1tkca1, d1tkca3, d1tkcb1, d1tkcb3
        complexed with ca, m6t
    7. Domains for 1trk:
      1. 1361634Domain d1trka2: 1trk A:338-534 [31804]
        Other proteins in same PDB: d1trka1, d1trka3, d1trkb1, d1trkb3
        complexed with ca, tpp
      2. 1361635Domain d1trkb2: 1trk B:338-534 [31806]
        Other proteins in same PDB: d1trka1, d1trka3, d1trkb1, d1trkb3
        complexed with ca, tpp
  2. 1361646Escherichia coli [TaxId:562] [89650] (4 PDB entries)
    1. Domains for 1qgd:
      1. 1361653Domain d1qgda1: 1qgd A:333-527 [88367]
        Other proteins in same PDB: d1qgda2, d1qgda3, d1qgdb2, d1qgdb3
        complexed with ca, so4, tpp
      2. 1361654Domain d1qgdb1: 1qgd B:333-527 [88370]
        Other proteins in same PDB: d1qgda2, d1qgda3, d1qgdb2, d1qgdb3
        complexed with ca, so4, tpp
    2. Domains for 2r5n:
      1. 1361649Domain d2r5na1: 2r5n A:333-527 [151591]
        Other proteins in same PDB: d2r5na2, d2r5na3, d2r5nb2, d2r5nb3
        automatically matched to d1qgda1
        complexed with ca, edo, r5p, rp5, tpp
      2. 1361650Domain d2r5nb1: 2r5n B:333-527 [151594]
        Other proteins in same PDB: d2r5na2, d2r5na3, d2r5nb2, d2r5nb3
        automatically matched to d1qgda1
        complexed with ca, edo, r5p, rp5, tpp
    3. Domains for 2r8o:
      1. 1361647Domain d2r8oa1: 2r8o A:333-527 [151731]
        Other proteins in same PDB: d2r8oa2, d2r8oa3, d2r8ob2, d2r8ob3
        automatically matched to d1qgda1
        complexed with ca, edo, t5x
      2. 1361648Domain d2r8ob1: 2r8o B:333-527 [151734]
        Other proteins in same PDB: d2r8oa2, d2r8oa3, d2r8ob2, d2r8ob3
        automatically matched to d1qgda1
        complexed with ca, edo, t5x
    4. Domains for 2r8p:
      1. 1361651Domain d2r8pa1: 2r8p A:333-527 [151737]
        Other proteins in same PDB: d2r8pa2, d2r8pa3, d2r8pb2, d2r8pb3
        automatically matched to d1qgda1
        complexed with ca, edo, t6f
      2. 1361652Domain d2r8pb1: 2r8p B:333-527 [151740]
        Other proteins in same PDB: d2r8pa2, d2r8pa3, d2r8pb2, d2r8pb3
        automatically matched to d1qgda1
        complexed with ca, edo, t6f
  3. 1361655Leishmania mexicana mexicana [TaxId:44270] [117521] (1 PDB entry)
    Uniprot Q8MPM3
  4. 1361658Maize (Zea mays) [TaxId:4577] [88738] (1 PDB entry)

More info for Protein Transketolase (TK), Pyr module from c.36.1.6: TK-like Pyr module

Timeline for Protein Transketolase (TK), Pyr module from c.36.1.6: TK-like Pyr module: