SCOP 1.75: Superfamily b.122.1: PUA domain-like

Lineage for Superfamily b.122.1: PUA domain-like

1. Root: SCOP 1.75

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.122: PUA domain-like [88696] (1 superfamily)
   pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other

4. Superfamily b.122.1: PUA domain-like [88697] (13 families)

Families:

1. b.122.1.1: PUA domain [88698] (6 proteins)
   RNA-binding domain

2. b.122.1.2: YggJ N-terminal domain-like [89451] (3 proteins)

3. b.122.1.3: ATP sulfurylase N-terminal domain [63801] (1 protein)
   contains extra structures; some similarity to the PK beta-barrel domain

4. b.122.1.4: Hypothetical protein EF3133 [110339] (1 protein)
   Pfam PF06171; DUF984

5. b.122.1.5: Hypothetical protein TTHA0113 [117348] (1 protein)
   Pfam PF04266; DUF437

6. b.122.1.6: ProFAR isomerase associated domain [117351] (2 proteins)
   Pfam PF07060; DUF1530

7. b.122.1.7: yqfB-like [117356] (1 protein)
   Pfam PF06164; DUF978

8. b.122.1.8: Atu2648/PH1033-like [141703] (6 proteins)
   Pfam PF01878; DUF55

9. b.122.1.9: Hypothetical RNA methyltransferase domain (HRMD) [141716] (3 proteins)
   N-terminal part of Pfam PF03602, structurally similar to PUA domain family

10. b.122.1.10: LON domain-like [141723] (2 proteins)
    Pfam PF02190

11. b.122.1.11: PrgU-like [159365] (1 protein)
    Pfam PF09627

12. b.122.1.12: SRA domain-like [159368] (1 protein)
    Pfam PF02182; recognizes the modified cytosine base (m5C) by flipping it out of DNA

13. b.122.1.13: YtmB-like [159372] (1 protein)
    PfamB PB020780

More info for Superfamily b.122.1: PUA domain-like

Timeline for Superfamily b.122.1: PUA domain-like:

• Superfamily b.122.1: PUA domain-like first appeared in SCOP 1.65
  
• Superfamily b.122.1: PUA domain-like appears in SCOP 1.73
  
• Superfamily b.122.1: PUA domain-like appears in SCOPe 2.01
  
• Superfamily b.122.1: PUA domain-like appears in the current release, SCOPe 2.08