SCOPe 2.08: Family b.121.5.2: Parvoviridae-like VP

Lineage for Family b.121.5.2: Parvoviridae-like VP

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.5: ssDNA viruses [88645] (4 families)

5. Family b.121.5.2: Parvoviridae-like VP [88646] (3 proteins)
   automatically mapped to Pfam PF00740

Proteins:

1. Dependovirus capsid protein [74887] (1 species)

   • Species Adeno-associated virus, aav-2 [TaxId:272636] [74888] (1 PDB entry)
     a vector for human genome therapy

2. Parvovirus (panleukopenia virus) capsid protein [49661] (6 species)

   1. Species Canine parvovirus [TaxId:10788] [49662] (7 PDB entries)

   2. Species Feline panleukopenia virus, strain b [TaxId:10786] [49689] (1 PDB entry)

   3. Species Feline parvovirus [TaxId:10785] [49663] (3 PDB entries)

   4. Species Human parvovirus B19 [TaxId:10798] [110116] (1 PDB entry)
      Uniprot Q9JGS0 246-781

   5. Species Murine minute virus, strain i [TaxId:10794] [49665] (2 PDB entries)

   6. Species Porcine parvovirus [TaxId:10796] [69201] (1 PDB entry)

3. automated matches [190920] (12 species)
   not a true protein

   1. Species Adeno-associated virus - 1 [TaxId:85106] [255978] (3 PDB entries)

   2. Species Adeno-associated virus - 2 [TaxId:648242] [370930] (1 PDB entry)

   3. Species Adeno-associated virus - 5 [TaxId:82300] [372302] (2 PDB entries)

   4. Species Adeno-associated virus - 6 [TaxId:68558] [254925] (5 PDB entries)

   5. Species Adeno-associated virus - 7 [TaxId:202812] [390290] (1 PDB entry)

   6. Species Adeno-associated virus - 8 [TaxId:202813] [188409] (5 PDB entries)

   7. Species Adeno-associated virus 2 (isolate srivastava/1982) [TaxId:648242] [366489] (2 PDB entries)

   8. Species Adeno-associated virus 3b [TaxId:68742] [255908] (2 PDB entries)

   9. Species Adeno-associated virus 9 [TaxId:235455] [193792] (1 PDB entry)

   10. Species Adeno-associated virus [TaxId:272636] [334622] (3 PDB entries)

   11. Species Canine parvovirus 2 [TaxId:246878] [374284] (1 PDB entry)

   12. Species H-1 parvovirus [TaxId:10799] [256260] (1 PDB entry)

More info for Family b.121.5.2: Parvoviridae-like VP

Timeline for Family b.121.5.2: Parvoviridae-like VP:

• Family b.121.5.2: Parvoviridae-like VP first appeared in SCOP 1.65
  
• Family b.121.5.2: Parvoviridae-like VP appears in SCOPe 2.07