Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1755446Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1755447Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1755448Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1755653Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1756577Species Norway rat (Rattus norvegicus) [TaxId:10116] [88560] (16 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 1756590Domain d1bfob1: 1bfo B:1-121 [20311]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    2. 1756591Domain d1bfod1: 1bfo D:1-121 [20313]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    3. 1756592Domain d1bfof1: 1bfo F:1-121 [20315]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    4. 1756593Domain d1bfoh1: 1bfo H:1-121 [20317]
      Other proteins in same PDB: d1bfoa1, d1bfoa2, d1bfob2, d1bfoc1, d1bfoc2, d1bfod2, d1bfoe1, d1bfoe2, d1bfof2, d1bfog1, d1bfog2, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 1756594Domain d1c5db1: 1c5d B:1-117 [20415]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 1756595Domain d1c5dh1: 1c5d H:1-117 [20413]
      Other proteins in same PDB: d1c5da1, d1c5da2, d1c5db2, d1c5dh2, d1c5dl1, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 1756607Domain d1f3rb1: 1f3r B:1-123 [20416]
      Other proteins in same PDB: d1f3rb2
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
  6. Domain(s) for 1fn4:
    1. 1756604Domain d1fn4b1: 1fn4 B:1-106 [59886]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
    2. 1756605Domain d1fn4d1: 1fn4 D:1-106 [59890]
      Other proteins in same PDB: d1fn4a1, d1fn4a2, d1fn4b2, d1fn4c1, d1fn4c2, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 1756579Domain d1lk3h1: 1lk3 H:1-119 [73952]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
    2. 1756580Domain d1lk3i1: 1lk3 I:1-119 [73954]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h2, d1lk3i2, d1lk3l1, d1lk3l2, d1lk3m1, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1oaq:
  9. Domain(s) for 1oar:
    1. 1756586Domain d1oarh_: 1oar H: [92709]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    2. 1756587Domain d1oari_: 1oar I: [92710]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    3. 1756588Domain d1oarj_: 1oar J: [92711]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
    4. 1756589Domain d1oark_: 1oar K: [92712]
      Other proteins in same PDB: d1oarl_, d1oarm_, d1oarn_, d1oaro_
      part of IgE Fv spe-7
      complexed with azn, cac, cl, dms, edo, na
  10. Domain(s) for 1oau:
    1. 1756582Domain d1oauh_: 1oau H: [92717]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    2. 1756583Domain d1oaui_: 1oau I: [92718]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    3. 1756584Domain d1oauj_: 1oau J: [92719]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
    4. 1756585Domain d1oauk_: 1oau K: [92720]
      Other proteins in same PDB: d1oaul_, d1oaum_, d1oaun_, d1oauo_
      part of IgE Fv spe-7
      complexed with dnf, imd, ser
  11. Domain(s) for 1oax:
    1. 1756602Domain d1oaxh_: 1oax H: [92725]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
      complexed with anq
    2. 1756603Domain d1oaxj_: 1oax J: [92727]
      Other proteins in same PDB: d1oaxl_, d1oaxm_, d1oaxn_, d1oaxo_
      part of IgE Fv spe-7
      complexed with anq
  12. Domain(s) for 1oay:
    1. 1756600Domain d1oayh_: 1oay H: [92733]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
      complexed with fur
    2. 1756601Domain d1oayj_: 1oay J: [92735]
      Other proteins in same PDB: d1oayl_, d1oaym_, d1oayn_, d1oayo_
      part of IgE Fv spe-7
      complexed with fur
  13. Domain(s) for 1oaz:
    1. 1756608Domain d1oazh_: 1oaz H: [92743]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
    2. 1756609Domain d1oazj_: 1oaz J: [92744]
      Other proteins in same PDB: d1oaza_, d1oazb_, d1oazl_, d1oazn_
      part of IgE Fv spe-7
  14. Domain(s) for 1ocw:
  15. Domain(s) for 2arj:
    1. 1756598Domain d2arjb1: 2arj B:1-113 [144831]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq_, d2arjr_
    2. 1756599Domain d2arjh1: 2arj H:1-113 [144833]
      Other proteins in same PDB: d2arja1, d2arja2, d2arjb2, d2arjh2, d2arjl1, d2arjl2, d2arjq_, d2arjr_
      automated match to d2arjb1
  16. Domain(s) for 2bjm:

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: