SCOP 1.73: Species: Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]

Lineage for Species: Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]

Root: SCOP 1.73
Class b: All beta proteins [48724] (165 folds)
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
sandwich; 7 strands in 2 sheets; greek-key
some members of the fold have additional strands
Superfamily b.1.1: Immunoglobulin [48726] (4 families)
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)

Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species

Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] [88558] (22 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 7.2 [TaxId: 10090]:

Domain(s) for 1c08:
- Domain d1c08b_: 1c08 B: [19975]
  Other proteins in same PDB: d1c08a_, d1c08c_
  part of Fv HyHEL-10
Domain(s) for 1dqd:
- Domain d1dqdh1: 1dqd H:1-122 [20441]
  Other proteins in same PDB: d1dqdh2, d1dqdl1, d1dqdl2
  part of Fab HGR-2 F6, a competitive antagonist of the glucagon receptor
Domain(s) for 1dqj:
- Domain d1dqjb1: 1dqj B:1-113 [20425]
  Other proteins in same PDB: d1dqja1, d1dqja2, d1dqjb2, d1dqjc_
  part of anti-lysozyme Fab HYHEL-63
Domain(s) for 1dqm:
- Domain d1dqmh1: 1dqm H:2-113 [20427]
  Other proteins in same PDB: d1dqmh2, d1dqml1, d1dqml2
  part of anti-lysozyme Fab HYHEL-63
Domain(s) for 1dqq:
1. Domain d1dqqb1: 1dqq B:1-113 [20421]
  Other proteins in same PDB: d1dqqa1, d1dqqa2, d1dqqb2, d1dqqc1, d1dqqc2, d1dqqd2
2. Domain d1dqqd1: 1dqq D:1-113 [20423]
  Other proteins in same PDB: d1dqqa1, d1dqqa2, d1dqqb2, d1dqqc1, d1dqqc2, d1dqqd2
  part of anti-lysozyme Fab HYHEL-63
Domain(s) for 1ic4:
- Domain d1ic4h_: 1ic4 H: [62251]
  Other proteins in same PDB: d1ic4l_, d1ic4y_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1ic5:
- Domain d1ic5h_: 1ic5 H: [62254]
  Other proteins in same PDB: d1ic5l_, d1ic5y_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1ic7:
- Domain d1ic7h_: 1ic7 H: [62258]
  Other proteins in same PDB: d1ic7l_, d1ic7y_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1j1o:
- Domain d1j1oh_: 1j1o H: [77057]
  Other proteins in same PDB: d1j1ol_, d1j1oy_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1j1p:
- Domain d1j1ph_: 1j1p H: [77060]
  Other proteins in same PDB: d1j1pl_, d1j1py_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1j1x:
- Domain d1j1xh_: 1j1x H: [77063]
  Other proteins in same PDB: d1j1xl_, d1j1xy_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1nak:
1. Domain d1nakh1: 1nak H:1-113 [91753]
  Other proteins in same PDB: d1nakh2, d1naki2, d1nakl1, d1nakl2, d1nakm1, d1nakm2
2. Domain d1naki1: 1nak I:1-113 [91755]
  Other proteins in same PDB: d1nakh2, d1naki2, d1nakl1, d1nakl2, d1nakm1, d1nakm2
  part of Fab 83.1 against HIV-1 gp120
Domain(s) for 1nby:
- Domain d1nbyb1: 1nby B:301-413 [85538]
  Other proteins in same PDB: d1nbya1, d1nbya2, d1nbyb2, d1nbyc_
  part of anti-lysozyme Fab HYHEL-63
  mutant
Domain(s) for 1nbz:
- Domain d1nbzb1: 1nbz B:301-413 [85543]
  Other proteins in same PDB: d1nbza1, d1nbza2, d1nbzb2, d1nbzc_
  part of anti-lysozyme Fab HYHEL-63
  mutant
Domain(s) for 1ndg:
- Domain d1ndgb1: 1ndg B:301-413 [85578]
  Other proteins in same PDB: d1ndga1, d1ndga2, d1ndgb2, d1ndgc_
  a part of Fab HYHEL-8
  complexed with acy; mutant
Domain(s) for 1ndm:
- Domain d1ndmb1: 1ndm B:301-413 [85583]
  Other proteins in same PDB: d1ndma1, d1ndma2, d1ndmb2, d1ndmc_
  a part of Fab HYHEL-26
  mutant
Domain(s) for 1osp:
- Domain d1osph1: 1osp H:1-120 [20117]
  Other proteins in same PDB: d1osph2, d1ospl1, d1ospl2, d1ospo_
  part of Fab 184.1 against OspA
  mutant
Domain(s) for 1ua6:
- Domain d1ua6h_: 1ua6 H: [99129]
  Other proteins in same PDB: d1ua6l_, d1ua6y_
  part of Fv HyHEL-10
  mutant
Domain(s) for 1uac:
- Domain d1uach_: 1uac H: [99132]
  Other proteins in same PDB: d1uacl_, d1uacy_
  part of Fv HyHEL-10
  mutant
Domain(s) for 2dqi:
- Domain d2dqih1: 2dqi H:1-114 [131633]
  Other proteins in same PDB: d2dqiy1
  automatically matched to d1c08b_
  mutant
Domain(s) for 2dqj:
- Domain d2dqjh1: 2dqj H:1-114 [131635]
  Other proteins in same PDB: d2dqjl1, d2dqjy1
  automatically matched to d1c08b_
Domain(s) for 3hfm:
- Domain d3hfmh1: 3hfm H:1-113 [19977]
  Other proteins in same PDB: d3hfmh2, d3hfml1, d3hfml2, d3hfmy_
  part of Fab HyHEL-10

More info for Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH:

Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH first appeared in SCOP 1.65
Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH appears in SCOP 1.71
Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH appears in SCOP 1.75
Species Mouse (Mus musculus), cluster 7.2 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH appears in the current release, SCOPe 2.08