Lineage for Species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 929299Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 929300Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 929301Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 929498Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 930274Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] [88557] (38 PDB entries)
    Uniprot P18532 # HV61_MOUSE Ig heavy chain V region 1B43 precursor

PDB entries in Species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1c12:
  5. Domain(s) for 1cf8:
  6. Domain(s) for 1ezv:
  7. Domain(s) for 1f58:
  8. Domain(s) for 1f8t:
  9. Domain(s) for 1f90:
  10. Domain(s) for 1hq4:
    1. 930309Domain d1hq4b1: 1hq4 B:1-113 [83623]
      Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
    2. 930310Domain d1hq4d1: 1hq4 D:1-113 [83627]
      Other proteins in same PDB: d1hq4a1, d1hq4a2, d1hq4b2, d1hq4c1, d1hq4c2, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  11. Domain(s) for 1kb9:
  12. Domain(s) for 1kc5:
  13. Domain(s) for 1kcr:
  14. Domain(s) for 1kcs:
  15. Domain(s) for 1kcu:
  16. Domain(s) for 1kcv:
  17. Domain(s) for 1ken:
    1. 930317Domain d1kenh1: 1ken H:1-120 [72379]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 930318Domain d1kent1: 1ken T:1-120 [72383]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh2, d1kenl1, d1kenl2, d1kent2, d1kenu1, d1kenu2
      part of Fab against influenza virus hemagglutinin
  18. Domain(s) for 1kyo:
    1. 930313Domain d1kyoj_: 1kyo J: [73262]
      Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, sma
    2. 930314Domain d1kyou_: 1kyo U: [73277]
      Other proteins in same PDB: d1kyoa1, d1kyoa2, d1kyob1, d1kyob2, d1kyoc2, d1kyoc3, d1kyod1, d1kyod2, d1kyoe1, d1kyoe2, d1kyof_, d1kyog_, d1kyoh_, d1kyoi_, d1kyok_, d1kyol1, d1kyol2, d1kyom1, d1kyom2, d1kyon2, d1kyon3, d1kyoo1, d1kyoo2, d1kyop1, d1kyop2, d1kyoq_, d1kyor_, d1kyos_, d1kyot_, d1kyov_, d1kyow_
      part of Fv against Rieske protein from the yeast cytochrome bc1 complex
      complexed with fes, hem, sma
  19. Domain(s) for 1ncw:
  20. Domain(s) for 1nd0:
    1. 930302Domain d1nd0b1: 1nd0 B:1-113 [85561]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    2. 930303Domain d1nd0d1: 1nd0 D:1-113 [85565]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    3. 930304Domain d1nd0f1: 1nd0 F:1-113 [85569]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
    4. 930305Domain d1nd0h1: 1nd0 H:1-113 [85573]
      Other proteins in same PDB: d1nd0a1, d1nd0a2, d1nd0b2, d1nd0c1, d1nd0c2, d1nd0d2, d1nd0e1, d1nd0e2, d1nd0f2, d1nd0g1, d1nd0g2, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
  21. Domain(s) for 1nsn:
  22. Domain(s) for 1orq:
  23. Domain(s) for 1ors:
  24. Domain(s) for 1p84:
  25. Domain(s) for 1ru9:
  26. Domain(s) for 1rua:
  27. Domain(s) for 1ruk:
  28. Domain(s) for 1rul:
  29. Domain(s) for 1rum:
  30. Domain(s) for 1rup:
  31. Domain(s) for 1s5i:
  32. Domain(s) for 2a0l:
    1. 930319Domain d2a0ld1: 2a0l D:1-116 [125957]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0lc1, d2a0le1
      automatically matched to d1orsb1
      complexed with k
    2. 930320Domain d2a0lf1: 2a0l F:1-116 [125959]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0lc1, d2a0le1
      automatically matched to d1orsb1
      complexed with k
  33. Domain(s) for 2f58:
  34. Domain(s) for 2ibz:
  35. Domain(s) for 32c2:
  36. Domain(s) for 3cx5:
    1. 930285Domain d3cx5j_: 3cx5 J: [157090]
      Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f1, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q1, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
    2. 930286Domain d3cx5u_: 3cx5 U: [157106]
      Other proteins in same PDB: d3cx5a1, d3cx5a2, d3cx5b1, d3cx5b2, d3cx5c1, d3cx5c2, d3cx5d1, d3cx5d2, d3cx5e1, d3cx5e2, d3cx5f1, d3cx5g_, d3cx5h_, d3cx5i_, d3cx5k_, d3cx5l1, d3cx5l2, d3cx5m1, d3cx5m2, d3cx5n1, d3cx5n2, d3cx5o1, d3cx5o2, d3cx5p1, d3cx5p2, d3cx5q1, d3cx5r_, d3cx5s_, d3cx5t_, d3cx5v_, d3cx5w_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, sma, suc, umq
  37. Domain(s) for 3cxh:
    1. 930298Domain d3cxhj_: 3cxh J: [157123]
      Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf1, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq1, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq
    2. 930299Domain d3cxhu_: 3cxh U: [157139]
      Other proteins in same PDB: d3cxha1, d3cxha2, d3cxhb1, d3cxhb2, d3cxhc1, d3cxhc2, d3cxhd1, d3cxhd2, d3cxhe1, d3cxhe2, d3cxhf1, d3cxhg_, d3cxhh_, d3cxhi_, d3cxhk_, d3cxhl1, d3cxhl2, d3cxhm1, d3cxhm2, d3cxhn1, d3cxhn2, d3cxho1, d3cxho2, d3cxhp1, d3cxhp2, d3cxhq1, d3cxhr_, d3cxhs_, d3cxht_, d3cxhv_, d3cxhw_
      automated match to d1ezvx_
      complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, sma, suc, umq
  38. Domain(s) for 3f58:

More info for Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Mouse (Mus musculus), cluster 7.1 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: