Class b: All beta proteins [48724] (144 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (23 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (4 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (27 proteins) |
Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species) VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88554] (32 PDB entries) |
Domain d1bj1h1: 1bj1 H:1-123 [20323] Other proteins in same PDB: d1bj1h2, d1bj1j1, d1bj1j2, d1bj1k2, d1bj1l1, d1bj1l2, d1bj1v_, d1bj1w_ |
Domain d1bj1k1: 1bj1 K:1-123 [20325] Other proteins in same PDB: d1bj1h2, d1bj1j1, d1bj1j2, d1bj1k2, d1bj1l1, d1bj1l2, d1bj1v_, d1bj1w_ part of humanized Fab-12 neutralizing VEGF |
Domain d1c1eh1: 1c1e H:1-119 [20239] Other proteins in same PDB: d1c1eh2, d1c1el1, d1c1el2 part of Diels-Alder catalytic Fab 1E9 |
Domain d1cl7h1: 1cl7 H:1-113 [20419] Other proteins in same PDB: d1cl7.1, d1cl7l1, d1cl7l2 part of Fab 1696 against HIV-1 protease |
Domain d1cz8h1: 1cz8 H:1-123 [20327] Other proteins in same PDB: d1cz8h2, d1cz8l1, d1cz8l2, d1cz8v_, d1cz8w_, d1cz8x1, d1cz8x2, d1cz8y2 |
Domain d1cz8y1: 1cz8 Y:1-123 [20329] Other proteins in same PDB: d1cz8h2, d1cz8l1, d1cz8l2, d1cz8v_, d1cz8w_, d1cz8x1, d1cz8x2, d1cz8y2 part of humanized Fab-12 neutralizing VEGF; affinity matured |
Domain d1dbah1: 1dba H:1-112 [19803] Other proteins in same PDB: d1dbah2, d1dbal1, d1dbal2 part of Fab DB3 |
Domain d1dbbh1: 1dbb H:1-112 [19799] Other proteins in same PDB: d1dbbh2, d1dbbl1, d1dbbl2 part of Fab DB3 |
Domain d1dbjh1: 1dbj H:1-112 [19801] Other proteins in same PDB: d1dbjh2, d1dbjl1, d1dbjl2 part of Fab DB3 |
Domain d1dbkh1: 1dbk H:1-112 [19807] Other proteins in same PDB: d1dbkh2, d1dbkl1, d1dbkl2 part of Fab DB3 |
Domain d1dbmh1: 1dbm H:1-112 [19805] Other proteins in same PDB: d1dbmh2, d1dbml1, d1dbml2 part of Fab DB3 |
Domain d1ghfh1: 1ghf H:1-115 [20109] Other proteins in same PDB: d1ghfh2, d1ghfl1, d1ghfl2 part of Fab GH1002 |
Domain d1jglh1: 1jgl H:1-113 [66679] Other proteins in same PDB: d1jglh2, d1jgll1, d1jgll2 part of anti-estradiol Fab 57-2 |
Domain d1jhkh1: 1jhk H:2-113 [66715] Other proteins in same PDB: d1jhkh2, d1jhkl1, d1jhkl2 part of anti-estradiol Fab 57-2 |
Domain d1jp5a2: 1jp5 A:128-247 [67002] Other proteins in same PDB: d1jp5a1, d1jp5b1 |
Domain d1jp5b2: 1jp5 B:128-247 [67004] Other proteins in same PDB: d1jp5a1, d1jp5b1 part of scFv 1695; complexed with the epitope peptide from HIV-1 protease |
Domain d1n4xh_: 1n4x H: [85324] Other proteins in same PDB: d1n4xl_, d1n4xm_ |
Domain d1n4xi_: 1n4x I: [85325] Other proteins in same PDB: d1n4xl_, d1n4xm_ part of scFv 1695 |
Domain d1n64h1: 1n64 H:1-113 [80114] Other proteins in same PDB: d1n64h2, d1n64l1, d1n64l2 part of anti-HCV Fab 19D9D6; complex with peptide, chain P (related to 1cwx) |
Domain d1ncah1: 1nca H:1-113 [19983] Other proteins in same PDB: d1ncah2, d1ncal1, d1ncal2, d1ncan_ part of Fab NC41 |
Domain d1ncbh1: 1ncb H:1-113 [19981] Other proteins in same PDB: d1ncbh2, d1ncbl1, d1ncbl2, d1ncbn_ part of Fab NC41 |
Domain d1ncch1: 1ncc H:1-113 [19987] Other proteins in same PDB: d1ncch2, d1nccl1, d1nccl2, d1nccn_ part of Fab NC41 |
Domain d1ncdh1: 1ncd H:1-113 [19985] Other proteins in same PDB: d1ncdh2, d1ncdl1, d1ncdl2, d1ncdn_ part of Fab NC41 |
Domain d1nlbh1: 1nlb H:1-113 [80621] Other proteins in same PDB: d1nlbh2, d1nlbl1, d1nlbl2 part of anti-HCV Fab 19D9D6 |
Domain d1ob1b1: 1ob1 B:1-113 [86750] Other proteins in same PDB: d1ob1a1, d1ob1a2, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d1, d1ob1d2, d1ob1e2, d1ob1f1, d1ob1f2 |
Domain d1ob1e1: 1ob1 E:1-113 [86756] Other proteins in same PDB: d1ob1a1, d1ob1a2, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1d1, d1ob1d2, d1ob1e2, d1ob1f1, d1ob1f2 part of anti-Pf MSP1 Fab |
Domain d1teth1: 1tet H:1-112 [19903] Other proteins in same PDB: d1teth2, d1tetl1, d1tetl2 part of Fab TE33 |
Domain d1tpxb1: 1tpx B:1-113 [107190] Other proteins in same PDB: d1tpxa_, d1tpxb2, d1tpxc2 |
Domain d1tpxc1: 1tpx C:1-107 [107192] Other proteins in same PDB: d1tpxa_, d1tpxb2, d1tpxc2 |
Domain d1tqbb1: 1tqb B:1-113 [107213] Other proteins in same PDB: d1tqba_, d1tqbb2, d1tqbc2 |
Domain d1tqbc1: 1tqb C:1-107 [107215] Other proteins in same PDB: d1tqba_, d1tqbb2, d1tqbc2 |
Domain d1tqcb1: 1tqc B:1-113 [107218] Other proteins in same PDB: d1tqca_, d1tqcb2, d1tqcc2 |
Domain d1tqcc1: 1tqc C:1-107 [107220] Other proteins in same PDB: d1tqca_, d1tqcb2, d1tqcc2 |
Domain d2dblh1: 2dbl H:1-112 [19809] Other proteins in same PDB: d2dblh2, d2dbll1, d2dbll2 part of Fab DB3 |
Timeline for Species Mouse (Mus musculus), cluster 4 [TaxId:10090] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: