Lineage for Species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 651987Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 651988Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 651989Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)
  6. 652160Protein Immunoglobulin heavy chain variable domain, VH [88543] (20 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 652328Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (19 PDB entries)

PDB entries in Species: Human (Homo sapiens), cluster 3 [TaxId: 9606]:

  1. Domain(s) for 1adq:
  2. Domain(s) for 1aqk:
  3. Domain(s) for 1dee:
    1. 652346Domain d1deeb1: 1dee B:501-621 [20443]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
    2. 652347Domain d1deed1: 1dee D:1501-1621 [20445]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
    3. 652348Domain d1deef1: 1dee F:2501-2621 [20447]
      Other proteins in same PDB: d1deea1, d1deea2, d1deeb2, d1deec1, d1deec2, d1deed2, d1deee1, d1deee2, d1deef2, d1deeg_, d1deeh_
      part of IgM RF 2A2
  4. Domain(s) for 1dfb:
  5. Domain(s) for 1dql:
  6. Domain(s) for 1hez:
    1. 652349Domain d1hezb1: 1hez B:1-121 [60985]
      Other proteins in same PDB: d1heza1, d1heza2, d1hezb2, d1hezc1, d1hezc2, d1hezd2, d1heze_
    2. 652350Domain d1hezd1: 1hez D:1-121 [60989]
      Other proteins in same PDB: d1heza1, d1heza2, d1hezb2, d1hezc1, d1hezc2, d1hezd2, d1heze_
      part of IgM RF 2A2
      complexed with imd
  7. Domain(s) for 1igm:
  8. Domain(s) for 1nl0:
  9. Domain(s) for 1u6a:
  10. Domain(s) for 1w72:
    1. 652333Domain d1w72h1: 1w72 H:1-113 [114299]
      Other proteins in same PDB: d1w72a1, d1w72a2, d1w72b_, d1w72d1, d1w72d2, d1w72e_, d1w72h2, d1w72i2, d1w72l1, d1w72l2, d1w72m1, d1w72m2
    2. 652334Domain d1w72i1: 1w72 I:1-113 [114301]
      Other proteins in same PDB: d1w72a1, d1w72a2, d1w72b_, d1w72d1, d1w72d2, d1w72e_, d1w72h2, d1w72i2, d1w72l1, d1w72l2, d1w72m1, d1w72m2
      complexed with gol
  11. Domain(s) for 1y0l:
    1. 652341Domain d1y0lb1: 1y0l B:1-113 [122488]
      Other proteins in same PDB: d1y0la1, d1y0la2, d1y0lb2, d1y0lc1, d1y0lc2, d1y0ld2, d1y0le1, d1y0le2, d1y0lf2, d1y0lh2, d1y0ll1, d1y0ll2
      automatically matched to d1aqkh1
      complexed with cl, han
    2. 652342Domain d1y0ld1: 1y0l D:1-113 [122492]
      Other proteins in same PDB: d1y0la1, d1y0la2, d1y0lb2, d1y0lc1, d1y0lc2, d1y0ld2, d1y0le1, d1y0le2, d1y0lf2, d1y0lh2, d1y0ll1, d1y0ll2
      automatically matched to d1aqkh1
      complexed with cl, han
    3. 652343Domain d1y0lf1: 1y0l F:1-113 [122496]
      Other proteins in same PDB: d1y0la1, d1y0la2, d1y0lb2, d1y0lc1, d1y0lc2, d1y0ld2, d1y0le1, d1y0le2, d1y0lf2, d1y0lh2, d1y0ll1, d1y0ll2
      automatically matched to d1aqkh1
      complexed with cl, han
    4. 652344Domain d1y0lh1: 1y0l H:1-113 [122498]
      Other proteins in same PDB: d1y0la1, d1y0la2, d1y0lb2, d1y0lc1, d1y0lc2, d1y0ld2, d1y0le1, d1y0le2, d1y0lf2, d1y0lh2, d1y0ll1, d1y0ll2
      automatically matched to d1aqkh1
      complexed with cl, han
  12. Domain(s) for 1y18:
    1. 652352Domain d1y18b1: 1y18 B:1-113 [122523]
      Other proteins in same PDB: d1y18a1, d1y18a2, d1y18b2, d1y18c1, d1y18c2, d1y18d2, d1y18e1, d1y18e2, d1y18f2, d1y18h2, d1y18l1, d1y18l2
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
    2. 652353Domain d1y18d1: 1y18 D:1-113 [122527]
      Other proteins in same PDB: d1y18a1, d1y18a2, d1y18b2, d1y18c1, d1y18c2, d1y18d2, d1y18e1, d1y18e2, d1y18f2, d1y18h2, d1y18l1, d1y18l2
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
    3. 652354Domain d1y18f1: 1y18 F:1-113 [122531]
      Other proteins in same PDB: d1y18a1, d1y18a2, d1y18b2, d1y18c1, d1y18c2, d1y18d2, d1y18e1, d1y18e2, d1y18f2, d1y18h2, d1y18l1, d1y18l2
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
    4. 652355Domain d1y18h1: 1y18 H:1-113 [122533]
      Other proteins in same PDB: d1y18a1, d1y18a2, d1y18b2, d1y18c1, d1y18c2, d1y18d2, d1y18e1, d1y18e2, d1y18f2, d1y18h2, d1y18l1, d1y18l2
      automatically matched to d1aqkh1
      complexed with cl, han; mutant
  13. Domain(s) for 1zls:
  14. Domain(s) for 1zlu:
    1. 652358Domain d1zluh1: 1zlu H:1-112 [125258]
      Other proteins in same PDB: d1zluh2, d1zlum2
      automatically matched to d1aqkh1
      complexed with man
    2. 652359Domain d1zlum1: 1zlu M:1-112 [125260]
      Other proteins in same PDB: d1zluh2, d1zlum2
      automatically matched to d1aqkh1
      complexed with man
  15. Domain(s) for 1zlv:
    1. 652337Domain d1zlvh1: 1zlv H:1-112 [125262]
      Other proteins in same PDB: d1zlvh2, d1zlvm2
      automatically matched to d1aqkh1
      complexed with man
    2. 652338Domain d1zlvm1: 1zlv M:1-112 [125264]
      Other proteins in same PDB: d1zlvh2, d1zlvm2
      automatically matched to d1aqkh1
      complexed with man
  16. Domain(s) for 1zlw:
    1. 652356Domain d1zlwh1: 1zlw H:1-112 [125266]
      Other proteins in same PDB: d1zlwh2, d1zlwm2
      automatically matched to d1aqkh1
      complexed with bma, man
    2. 652357Domain d1zlwm1: 1zlw M:1-112 [125268]
      Other proteins in same PDB: d1zlwh2, d1zlwm2
      automatically matched to d1aqkh1
      complexed with bma, man
  17. Domain(s) for 2fb4:
  18. Domain(s) for 2ig2:
  19. Domain(s) for 8fab:
    1. 652329Domain d8fabb1: 8fab B:1-121 [19773]
      Other proteins in same PDB: d8faba1, d8faba2, d8fabb2, d8fabc1, d8fabc2, d8fabd2
    2. 652330Domain d8fabd1: 8fab D:1-121 [19775]
      Other proteins in same PDB: d8faba1, d8faba2, d8fabb2, d8fabc1, d8fabc2, d8fabd2
      part of Fab HIL

More info for Species Human (Homo sapiens), cluster 3 [TaxId:9606] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH

Timeline for Species Human (Homo sapiens), cluster 3 [TaxId:9606] from b.1.1.1 Immunoglobulin heavy chain variable domain, VH: