Lineage for Species: Mouse (Mus musculus) [TaxId: 10090]

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1510240Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1510241Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1510242Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1512286Protein Immunoglobulin light chain lambda variable domain, VL-lambda [88534] (9 species)
    VL-lambda domains of human antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the human genome; mouse VL-lambda domains belong to a single germline family
  7. 1512377Species Mouse (Mus musculus) [TaxId:10090] [88541] (35 PDB entries)

PDB entries in Species: Mouse (Mus musculus) [TaxId: 10090]:

  1. Domain(s) for 1a6u:
  2. Domain(s) for 1a6v:
    1. 1512396Domain d1a6vl_: 1a6v L: [20256]
      Other proteins in same PDB: d1a6vh_, d1a6vi_, d1a6vj_
      part of Fv B1-8
      complexed with npc
    2. 1512397Domain d1a6vm_: 1a6v M: [20258]
      Other proteins in same PDB: d1a6vh_, d1a6vi_, d1a6vj_
      part of Fv B1-8
      complexed with npc
    3. 1512398Domain d1a6vn_: 1a6v N: [20260]
      Other proteins in same PDB: d1a6vh_, d1a6vi_, d1a6vj_
      part of Fv B1-8
      complexed with npc
  3. Domain(s) for 1a6w:
  4. Domain(s) for 1dl7:
    • 1512404Domain d1dl7l_: 1dl7 L: [20498]
      Other proteins in same PDB: d1dl7h_
      part of Fv M3C65; conflict: annotated in PDB as human protein
      complexed with nch
  5. Domain(s) for 1etz:
    1. 1512402Domain d1etza1: 1etz A:1-110 [20480]
      Other proteins in same PDB: d1etza2, d1etzb1, d1etzb2, d1etzh1, d1etzh2, d1etzl2
      part of anti-sweetener Fab NC10.14
      complexed with gas
    2. 1512403Domain d1etzl1: 1etz L:1-110 [20478]
      Other proteins in same PDB: d1etza2, d1etzb1, d1etzb2, d1etzh1, d1etzh2, d1etzl2
      part of anti-sweetener Fab NC10.14
      complexed with gas
  6. Domain(s) for 1f4w:
  7. Domain(s) for 1f4x:
  8. Domain(s) for 1f4y:
  9. Domain(s) for 1gig:
  10. Domain(s) for 1ind:
  11. Domain(s) for 1ine:
  12. Domain(s) for 1jn6:
  13. Domain(s) for 1jnh:
    1. 1512409Domain d1jnha1: 1jnh A:1-108 [66939]
      Other proteins in same PDB: d1jnha2, d1jnhb1, d1jnhb2, d1jnhc2, d1jnhd1, d1jnhd2, d1jnhe2, d1jnhf1, d1jnhf2, d1jnhg2, d1jnhh1, d1jnhh2
      part of anti-estradiol Fab 10G6D6
      complexed with eco
    2. 1512410Domain d1jnhc1: 1jnh C:1-108 [66943]
      Other proteins in same PDB: d1jnha2, d1jnhb1, d1jnhb2, d1jnhc2, d1jnhd1, d1jnhd2, d1jnhe2, d1jnhf1, d1jnhf2, d1jnhg2, d1jnhh1, d1jnhh2
      part of anti-estradiol Fab 10G6D6
      complexed with eco
    3. 1512411Domain d1jnhe1: 1jnh E:1-108 [66947]
      Other proteins in same PDB: d1jnha2, d1jnhb1, d1jnhb2, d1jnhc2, d1jnhd1, d1jnhd2, d1jnhe2, d1jnhf1, d1jnhf2, d1jnhg2, d1jnhh1, d1jnhh2
      part of anti-estradiol Fab 10G6D6
      complexed with eco
    4. 1512412Domain d1jnhg1: 1jnh G:1-108 [66951]
      Other proteins in same PDB: d1jnha2, d1jnhb1, d1jnhb2, d1jnhc2, d1jnhd1, d1jnhd2, d1jnhe2, d1jnhf1, d1jnhf2, d1jnhg2, d1jnhh1, d1jnhh2
      part of anti-estradiol Fab 10G6D6
      complexed with eco
  14. Domain(s) for 1mfa:
  15. Domain(s) for 1mfb:
  16. Domain(s) for 1mfc:
  17. Domain(s) for 1mfd:
  18. Domain(s) for 1mfe:
  19. Domain(s) for 1nc2:
    1. 1512388Domain d1nc2a1: 1nc2 A:1-110 [91781]
      Other proteins in same PDB: d1nc2a2, d1nc2b1, d1nc2b2, d1nc2c2, d1nc2d1, d1nc2d2
      part of Fab 2d12.5
      complexed with cl, doe, nag, yt3
    2. 1512389Domain d1nc2c1: 1nc2 C:1-110 [91785]
      Other proteins in same PDB: d1nc2a2, d1nc2b1, d1nc2b2, d1nc2c2, d1nc2d1, d1nc2d2
      part of Fab 2d12.5
      complexed with cl, doe, nag, yt3
  20. Domain(s) for 1nc4:
    1. 1512391Domain d1nc4a1: 1nc4 A:1-110 [91789]
      Other proteins in same PDB: d1nc4a2, d1nc4b1, d1nc4b2, d1nc4c2, d1nc4d1, d1nc4d2
      part of Fab 2d12.5
      complexed with cl, dof, gd3, nag
    2. 1512392Domain d1nc4c1: 1nc4 C:1-110 [91793]
      Other proteins in same PDB: d1nc4a2, d1nc4b1, d1nc4b2, d1nc4c2, d1nc4d1, d1nc4d2
      part of Fab 2d12.5
      complexed with cl, dof, gd3, nag
  21. Domain(s) for 1ngp:
  22. Domain(s) for 1ngq:
  23. Domain(s) for 1nj9:
    1. 1512405Domain d1nj9a1: 1nj9 A:1-108 [91897]
      Other proteins in same PDB: d1nj9a2, d1nj9b1, d1nj9b2, d1nj9h1, d1nj9h2, d1nj9l2
      part of cocaine hydrolytic Fab 15a10
      complexed with na
    2. 1512406Domain d1nj9l1: 1nj9 L:1-108 [91903]
      Other proteins in same PDB: d1nj9a2, d1nj9b1, d1nj9b2, d1nj9h1, d1nj9h2, d1nj9l2
      part of cocaine hydrolytic Fab 15a10
      complexed with na
  24. Domain(s) for 1p4b:
  25. Domain(s) for 1p4i:
  26. Domain(s) for 1pg7:
    1. 1512414Domain d1pg7w1: 1pg7 W:1-108 [94682]
      Other proteins in same PDB: d1pg7h1, d1pg7h2, d1pg7i1, d1pg7i2, d1pg7l1, d1pg7l2, d1pg7m1, d1pg7m2, d1pg7w2, d1pg7x1, d1pg7x2, d1pg7y2, d1pg7z1, d1pg7z2
      part of Fab 6A6
    2. 1512415Domain d1pg7y1: 1pg7 Y:1-108 [94686]
      Other proteins in same PDB: d1pg7h1, d1pg7h2, d1pg7i1, d1pg7i2, d1pg7l1, d1pg7l2, d1pg7m1, d1pg7m2, d1pg7w2, d1pg7x1, d1pg7x2, d1pg7y2, d1pg7z1, d1pg7z2
      part of Fab 6A6
  27. Domain(s) for 1q0x:
  28. Domain(s) for 1q0y:
  29. Domain(s) for 1sm3:
  30. Domain(s) for 1yuh:
    1. 1512420Domain d1yuha1: 1yuh A:2-109 [20098]
      Other proteins in same PDB: d1yuha2, d1yuhb1, d1yuhb2, d1yuhh1, d1yuhh2, d1yuhl2
      part of an anti-nitrophenol Fab
      complexed with np
    2. 1512421Domain d1yuhl1: 1yuh L:2-109 [20096]
      Other proteins in same PDB: d1yuha2, d1yuhb1, d1yuhb2, d1yuhh1, d1yuhh2, d1yuhl2
      part of an anti-nitrophenol Fab
      complexed with np
  31. Domain(s) for 2bjm:
  32. Domain(s) for 2vir:
  33. Domain(s) for 2vis:
  34. Domain(s) for 2vit:
  35. Domain(s) for 3c6l:
    1. 1512423Domain d3c6la1: 3c6l A:7-109 [155977]
      Other proteins in same PDB: d3c6la2, d3c6lc1, d3c6lc2, d3c6ld1, d3c6ld2, d3c6le2, d3c6lg1, d3c6lg2, d3c6lh1, d3c6lh2
      automatically matched to d1lila1
      complexed with ca
    2. 1512424Domain d3c6le1: 3c6l E:7-109 [155983]
      Other proteins in same PDB: d3c6la2, d3c6lc1, d3c6lc2, d3c6ld1, d3c6ld2, d3c6le2, d3c6lg1, d3c6lg2, d3c6lh1, d3c6lh2
      automatically matched to d1lila1
      complexed with ca

More info for Species Mouse (Mus musculus) [TaxId:10090] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda

Timeline for Species Mouse (Mus musculus) [TaxId:10090] from b.1.1.1 Immunoglobulin light chain lambda variable domain, VL-lambda: