Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1755446Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1755447Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1755448Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1756616Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1757477Species Norway rat (Rattus norvegicus) [TaxId:10116] [88532] (9 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

  1. Domain(s) for 1bey:
  2. Domain(s) for 1bfo:
    1. 1757481Domain d1bfoa1: 1bfo A:1-107 [20310]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    2. 1757482Domain d1bfoc1: 1bfo C:1-107 [20312]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    3. 1757483Domain d1bfoe1: 1bfo E:1-107 [20314]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
    4. 1757484Domain d1bfog1: 1bfo G:1-107 [20316]
      Other proteins in same PDB: d1bfoa2, d1bfob1, d1bfob2, d1bfoc2, d1bfod1, d1bfod2, d1bfoe2, d1bfof1, d1bfof2, d1bfog2, d1bfoh1, d1bfoh2
      part of therapeutic monoclonal antibody CAMPATH-1G
  3. Domain(s) for 1c5d:
    1. 1757485Domain d1c5da1: 1c5d A:1-106 [20414]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
    2. 1757486Domain d1c5dl1: 1c5d L:1-106 [20412]
      Other proteins in same PDB: d1c5da2, d1c5db1, d1c5db2, d1c5dh1, d1c5dh2, d1c5dl2
      part of antibody against the main immunogenic region of the human muscle acetylcholine receptor
  4. Domain(s) for 1ce1:
  5. Domain(s) for 1f3r:
    • 1757494Domain d1f3rb2: 1f3r B:139-257 [20417]
      Other proteins in same PDB: d1f3rb1
      part of scFv MAB198 against the main immunogenic region of the human muscle acetylcholine receptor; order: VH-linker-VL
  6. Domain(s) for 1fn4:
    1. 1757489Domain d1fn4a1: 1fn4 A:1-107 [59884]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
      part of Fab 198 against acetylcholine receptor
    2. 1757490Domain d1fn4c1: 1fn4 C:1-107 [59888]
      Other proteins in same PDB: d1fn4a2, d1fn4b1, d1fn4b2, d1fn4c2, d1fn4d1, d1fn4d2
      part of Fab 198 against acetylcholine receptor
  7. Domain(s) for 1lk3:
    1. 1757478Domain d1lk3l1: 1lk3 L:1-106 [73956]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
      part of anti-IL-10 Fab 9D7
    2. 1757479Domain d1lk3m1: 1lk3 M:1-106 [73958]
      Other proteins in same PDB: d1lk3a_, d1lk3b_, d1lk3h1, d1lk3h2, d1lk3i1, d1lk3i2, d1lk3l2, d1lk3m2
      part of anti-IL-10 Fab 9D7
  8. Domain(s) for 1za3:
    1. 1757492Domain d1za3a1: 1za3 A:1-106 [124787]
      Other proteins in same PDB: d1za3a2, d1za3b1, d1za3b2, d1za3h1, d1za3h2, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
      automatically matched to d1c5da1
    2. 1757493Domain d1za3l1: 1za3 L:1-106 [124793]
      Other proteins in same PDB: d1za3a2, d1za3b1, d1za3b2, d1za3h1, d1za3h2, d1za3l2, d1za3r1, d1za3r2, d1za3r3, d1za3s1, d1za3s2, d1za3s3
      automatically matched to d1c5da1
  9. Domain(s) for 2arj:
    1. 1757487Domain d2arja1: 2arj A:1-107 [144829]
      Other proteins in same PDB: d2arja2, d2arjb1, d2arjb2, d2arjh1, d2arjh2, d2arjl2, d2arjq_, d2arjr_
    2. 1757488Domain d2arjl1: 2arj L:1-107 [144835]
      Other proteins in same PDB: d2arja2, d2arjb1, d2arjb2, d2arjh1, d2arjh2, d2arjl2, d2arjq_, d2arjr_
      automated match to d2arja1

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: