Class b: All beta proteins [48724] (176 folds) |
Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies) sandwich; 7 strands in 2 sheets; greek-key some members of the fold have additional strands |
Superfamily b.1.1: Immunoglobulin [48726] (5 families) |
Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins) |
Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species) VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species |
Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (40 PDB entries) Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1 |
Domain d1ay1l1: 1ay1 L:1-107 [20242] Other proteins in same PDB: d1ay1h1, d1ay1h2, d1ay1l2 part of Fab TP7 against Taq DNA polymerase |
Domain d1bafl1: 1baf L:1-108 [19778] Other proteins in same PDB: d1bafh1, d1bafh2, d1bafl2 part of Fab ANO2 complexed with npp |
Domain d1bqll1: 1bql L:1-106 [19970] Other proteins in same PDB: d1bqlh1, d1bqlh2, d1bqll2, d1bqly_ part of Fab HyHEL-5 part of Fab HyHEL-5 |
Domain d1dqdl1: 1dqd L:1-106 [20440] Other proteins in same PDB: d1dqdh1, d1dqdh2, d1dqdl2 part of Fab HGR-2 F6, a competitive antagonist of the glucagon receptor |
Domain d1forl1: 1for L:1-107 [19988] Other proteins in same PDB: d1forh1, d1forh2, d1forl2 part of Fab 17-Ia |
Domain d1miml1: 1mim L:1-105 [20128] Other proteins in same PDB: d1mimh1, d1mimh2, d1miml2 part of CD25-binding humanized Fab CHI621 |
Domain d1otsd1: 1ots D:1-106 [87419] Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2 part of anti-CLC chloride channel Fab complexed with cl |
Domain d1otsf1: 1ots F:1-106 [87423] Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2 part of anti-CLC chloride channel Fab complexed with cl |
Domain d1ottd1: 1ott D:1-106 [87429] Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2 part of anti-CLC chloride channel Fab complexed with cl; mutant |
Domain d1ottf1: 1ott F:1-106 [87433] Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2 part of anti-CLC chloride channel Fab complexed with cl; mutant |
Domain d1otud1: 1otu D:1-106 [87439] Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2 part of anti-CLC chloride channel Fab complexed with cl; mutant |
Domain d1otuf1: 1otu F:1-106 [87443] Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2 part of anti-CLC chloride channel Fab complexed with cl; mutant |
Domain d1pskl1: 1psk L:1-106 [20138] Other proteins in same PDB: d1pskh1, d1pskh2, d1pskl2 part of antibody against the melanoma associated gd2 ganglioside |
Domain d1qoka2: 1qok A:162-267 [20493] Other proteins in same PDB: d1qoka1 part of anti-carcinoembryonic scFv MFE-23 |
Domain d1rvfl_: 1rvf L: [19990] Other proteins in same PDB: d1rvf.1, d1rvf1_, d1rvf3_, d1rvfh_ part of Fv 17-Ia protein/RNA complex |
Domain d1v7ml1: 1v7m L:1-107 [100454] Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_ part of anti-trombopoetin Fab tn1 |
Domain d1v7mm1: 1v7m M:1-107 [100456] Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_ part of anti-trombopoetin Fab tn1 |
Domain d1v7nl1: 1v7n L:1-107 [100468] Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_ part of anti-trombopoetin Fab tn1 |
Domain d1v7nm1: 1v7n M:1-107 [100470] Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_ part of anti-trombopoetin Fab tn1 |
Domain d1v7nn1: 1v7n N:1-107 [100472] Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_ part of anti-trombopoetin Fab tn1 |
Domain d1v7no1: 1v7n O:1-107 [100474] Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_ part of anti-trombopoetin Fab tn1 |
Domain d1z3gl1: 1z3g L:1-106 [144733] Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2 |
Domain d1z3gm1: 1z3g M:1-106 [144735] Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2 automatically matched to 1Z3G L:1-106 |
Domain d2ez0d1: 2ez0 D:1-105 [132606] Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ez0f1: 2ez0 F:1-105 [132608] Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2hlfd1: 2hlf D:1-105 [136566] Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2hlff1: 2hlf F:1-105 [136568] Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht2d1: 2ht2 D:1-105 [136730] Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht2f1: 2ht2 F:1-105 [136732] Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht3d1: 2ht3 D:1-105 [136734] Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht3f1: 2ht3 F:1-105 [136736] Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht4d1: 2ht4 D:1-105 [136738] Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2ht4f1: 2ht4 F:1-105 [136740] Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2htkd1: 2htk D:1-105 [136745] Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2htkf1: 2htk F:1-105 [136747] Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2htld1: 2htl D:1-105 [136749] Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2htlf1: 2htl F:1-105 [136751] Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2 automatically matched to d1dqdl1 complexed with br; mutant |
Domain d2iffl1: 2iff L:1-106 [19972] Other proteins in same PDB: d2iffh1, d2iffh2, d2iffl2, d2iffy_ part of Fab HyHEL-5 mutant |
Domain d2oslb1: 2osl B:2-106 [139296] Other proteins in same PDB: d2oslb2, d2osll2 automatically matched to d1dqdl1 |
Domain d2osll1: 2osl L:2-106 [139298] Other proteins in same PDB: d2oslb2, d2osll2 automatically matched to d1dqdl1 |
Domain d2z93d1: 2z93 D:1-107 [154230] Other proteins in same PDB: d2z93a1, d2z93c1, d2z93d2 automated match to d1h3pl1 complexed with end |
Domain d2zkhl1: 2zkh L:1-107 [207870] Other proteins in same PDB: d2zkhh1, d2zkhh2, d2zkhl2 automated match to d1v7ml1 |
Domain d3ejzd1: 3ejz D:1-106 [227316] Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2 automated match to d1otsd1 complexed with br; mutant |
Domain d3ejzf1: 3ejz F:1-106 [227318] Other proteins in same PDB: d3ejza_, d3ejzb_, d3ejzd2, d3ejzf2 automated match to d1otsd1 complexed with br; mutant |
Domain d4ened1: 4ene D:1-106 [220683] Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2 automated match to d1otsd1 complexed with cl, dmu, mal |
Domain d4enef1: 4ene F:1-106 [220687] Other proteins in same PDB: d4enea_, d4eneb_, d4enec1, d4enec2, d4ened2, d4enee1, d4enee2, d4enef2 automated match to d1otsd1 complexed with cl, dmu, mal |
Domain d4kjqd1: 4kjq D:1-106 [224314] Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2 automated match to d1otsd1 complexed with f |
Domain d4kjqf1: 4kjq F:1-106 [224318] Other proteins in same PDB: d4kjqa_, d4kjqb_, d4kjqc1, d4kjqc2, d4kjqd2, d4kjqe1, d4kjqe2, d4kjqf2 automated match to d1otsd1 complexed with f |
Domain d4kk8d1: 4kk8 D:1-106 [224328] Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2 automated match to d1otsd1 complexed with f; mutant |
Domain d4kk8f1: 4kk8 F:1-106 [224332] Other proteins in same PDB: d4kk8a_, d4kk8b_, d4kk8c1, d4kk8c2, d4kk8d2, d4kk8e1, d4kk8e2, d4kk8f2 automated match to d1otsd1 complexed with f; mutant |
Domain d4kkld1: 4kkl D:1-106 [224338] Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2 automated match to d1otsd1 complexed with f; mutant |
Domain d4kklf1: 4kkl F:1-106 [224342] Other proteins in same PDB: d4kkla_, d4kklb_, d4kklc1, d4kklc2, d4kkld2, d4kkle1, d4kkle2, d4kklf2 automated match to d1otsd1 complexed with f; mutant |
Domain d4loud1: 4lou D:1-106 [224737] Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2 automated match to d1otsd1 mutant |
Domain d4louf1: 4lou F:1-106 [224741] Other proteins in same PDB: d4loua_, d4loub_, d4louc1, d4louc2, d4loud2, d4loue1, d4loue2, d4louf2 automated match to d1otsd1 mutant |
Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: