Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1103263Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1104358Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (15 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1104854Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (44 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 1104884Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
    2. 1104885Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 1104907Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 1104908Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 1104921Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 1104922Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 1104880Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 1104881Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 1104891Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 1104892Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 1104893Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 1104894Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  18. Domain(s) for 1wc7:
    1. 1104874Domain d1wc7a1: 1wc7 A:1-107 [120878]
      Other proteins in same PDB: d1wc7a2, d1wc7b1, d1wc7b2, d1wc7h1, d1wc7h2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
    2. 1104875Domain d1wc7l1: 1wc7 L:1-107 [120880]
      Other proteins in same PDB: d1wc7a2, d1wc7b1, d1wc7b2, d1wc7h1, d1wc7h2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
  19. Domain(s) for 1wcb:
    1. 1104867Domain d1wcba1: 1wcb A:1-107 [120882]
      Other proteins in same PDB: d1wcba2, d1wcbb1, d1wcbb2, d1wcbh1, d1wcbh2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
    2. 1104868Domain d1wcbl1: 1wcb L:1-107 [120884]
      Other proteins in same PDB: d1wcba2, d1wcbb1, d1wcbb2, d1wcbh1, d1wcbh2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
  20. Domain(s) for 1yqv:
  21. Domain(s) for 1z3g:
    1. 1104917Domain d1z3gl1: 1z3g L:1-106 [144733]
      Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2
    2. 1104918Domain d1z3gm1: 1z3g M:1-106 [144735]
      Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2
      automatically matched to 1Z3G L:1-106
  22. Domain(s) for 2b2x:
    1. 1104860Domain d2b2xl1: 2b2x L:2-106 [127750]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
    2. 1104861Domain d2b2xm1: 2b2x M:2-106 [127752]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
  23. Domain(s) for 2bmk:
    1. 1104858Domain d2bmka1: 2bmk A:1-107 [128798]
      Other proteins in same PDB: d2bmka2, d2bmkb1, d2bmkb2, d2bmkh1, d2bmkh2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
    2. 1104859Domain d2bmkl1: 2bmk L:1-107 [128800]
      Other proteins in same PDB: d2bmka2, d2bmkb1, d2bmkb2, d2bmkh1, d2bmkh2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
  24. Domain(s) for 2exw:
    1. 1104897Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 1104898Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  25. Domain(s) for 2exy:
    1. 1104923Domain d2exyd1: 2exy D:1-105 [132574]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
    2. 1104924Domain d2exyf1: 2exy F:1-105 [132576]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
  26. Domain(s) for 2ez0:
    1. 1104915Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104916Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  27. Domain(s) for 2fec:
    1. 1104919Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 1104920Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  28. Domain(s) for 2fed:
    1. 1104887Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 1104888Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  29. Domain(s) for 2fee:
    1. 1104895Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 1104896Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  30. Domain(s) for 2h2p:
    1. 1104903Domain d2h2pd1: 2h2p D:1-105 [136018]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
    2. 1104904Domain d2h2pf1: 2h2p F:1-105 [136020]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
  31. Domain(s) for 2h2s:
    1. 1104913Domain d2h2sd1: 2h2s D:1-105 [136024]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
    2. 1104914Domain d2h2sf1: 2h2s F:1-105 [136026]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
  32. Domain(s) for 2hlf:
    1. 1104911Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104912Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  33. Domain(s) for 2ht2:
    1. 1104909Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104910Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  34. Domain(s) for 2ht3:
    1. 1104905Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104906Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  35. Domain(s) for 2ht4:
    1. 1104889Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104890Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  36. Domain(s) for 2htk:
    1. 1104899Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104900Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  37. Domain(s) for 2htl:
    1. 1104901Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 1104902Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  38. Domain(s) for 2iff:
  39. Domain(s) for 2j4w:
  40. Domain(s) for 2j5l:
  41. Domain(s) for 2osl:
    1. 1104877Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 1104878Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
  42. Domain(s) for 2z91:
    1. 1104871Domain d2z91b1: 2z91 B:1-107 [154220]
      Other proteins in same PDB: d2z91a1, d2z91b2, d2z91c1, d2z91d2
      automatically matched to d1dqdl1
    2. 1104872Domain d2z91d1: 2z91 D:1-107 [154223]
      Other proteins in same PDB: d2z91a1, d2z91b2, d2z91c1, d2z91d2
      automatically matched to d1dqdl1
  43. Domain(s) for 2z92:
  44. Domain(s) for 2z93:

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: