Lineage for Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 929299Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 929300Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 929301Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 930396Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 930901Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (44 PDB entries)
    Uniprot P04940 # KV6F_MOUSE IG KAPPA CHAIN V-VI REGION NQ2-17.4.1

PDB entries in Species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]:

  1. Domain(s) for 1ay1:
  2. Domain(s) for 1baf:
  3. Domain(s) for 1bgx:
  4. Domain(s) for 1bql:
  5. Domain(s) for 1dqd:
  6. Domain(s) for 1eo8:
  7. Domain(s) for 1for:
  8. Domain(s) for 1mim:
  9. Domain(s) for 1ots:
    1. 930931Domain d1otsd1: 1ots D:1-106 [87419]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
    2. 930932Domain d1otsf1: 1ots F:1-106 [87423]
      Other proteins in same PDB: d1otsa_, d1otsb_, d1otsc1, d1otsc2, d1otsd2, d1otse1, d1otse2, d1otsf2
      part of anti-CLC chloride channel Fab
      complexed with cl
  10. Domain(s) for 1ott:
    1. 930954Domain d1ottd1: 1ott D:1-106 [87429]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 930955Domain d1ottf1: 1ott F:1-106 [87433]
      Other proteins in same PDB: d1otta_, d1ottb_, d1ottc1, d1ottc2, d1ottd2, d1otte1, d1otte2, d1ottf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  11. Domain(s) for 1otu:
    1. 930968Domain d1otud1: 1otu D:1-106 [87439]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
    2. 930969Domain d1otuf1: 1otu F:1-106 [87443]
      Other proteins in same PDB: d1otua_, d1otub_, d1otuc1, d1otuc2, d1otud2, d1otue1, d1otue2, d1otuf2
      part of anti-CLC chloride channel Fab
      complexed with cl; mutant
  12. Domain(s) for 1psk:
  13. Domain(s) for 1qok:
  14. Domain(s) for 1rvf:
  15. Domain(s) for 1sy6:
  16. Domain(s) for 1v7m:
    1. 930927Domain d1v7ml1: 1v7m L:1-107 [100454]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
    2. 930928Domain d1v7mm1: 1v7m M:1-107 [100456]
      Other proteins in same PDB: d1v7mh1, d1v7mh2, d1v7mi1, d1v7mi2, d1v7ml2, d1v7mm2, d1v7mv_, d1v7mx_
      part of anti-trombopoetin Fab tn1
  17. Domain(s) for 1v7n:
    1. 930938Domain d1v7nl1: 1v7n L:1-107 [100468]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    2. 930939Domain d1v7nm1: 1v7n M:1-107 [100470]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    3. 930940Domain d1v7nn1: 1v7n N:1-107 [100472]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
    4. 930941Domain d1v7no1: 1v7n O:1-107 [100474]
      Other proteins in same PDB: d1v7nh1, d1v7nh2, d1v7ni1, d1v7ni2, d1v7nj1, d1v7nj2, d1v7nk1, d1v7nk2, d1v7nl2, d1v7nm2, d1v7nn2, d1v7no2, d1v7nv_, d1v7nx_, d1v7ny_, d1v7nz_
      part of anti-trombopoetin Fab tn1
  18. Domain(s) for 1wc7:
    1. 930921Domain d1wc7a1: 1wc7 A:1-107 [120878]
      Other proteins in same PDB: d1wc7a2, d1wc7b1, d1wc7b2, d1wc7h1, d1wc7h2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
    2. 930922Domain d1wc7l1: 1wc7 L:1-107 [120880]
      Other proteins in same PDB: d1wc7a2, d1wc7b1, d1wc7b2, d1wc7h1, d1wc7h2, d1wc7l2
      automatically matched to d1dqdl1
      complexed with iod, pp3
  19. Domain(s) for 1wcb:
    1. 930914Domain d1wcba1: 1wcb A:1-107 [120882]
      Other proteins in same PDB: d1wcba2, d1wcbb1, d1wcbb2, d1wcbh1, d1wcbh2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
    2. 930915Domain d1wcbl1: 1wcb L:1-107 [120884]
      Other proteins in same PDB: d1wcba2, d1wcbb1, d1wcbb2, d1wcbh1, d1wcbh2, d1wcbl2
      automatically matched to d1dqdl1
      complexed with iod, pe1
  20. Domain(s) for 1yqv:
  21. Domain(s) for 1z3g:
    1. 930964Domain d1z3gl1: 1z3g L:1-106 [144733]
      Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2
    2. 930965Domain d1z3gm1: 1z3g M:1-106 [144735]
      Other proteins in same PDB: d1z3gh1, d1z3gi1, d1z3gl2, d1z3gm2
      automatically matched to 1Z3G L:1-106
  22. Domain(s) for 2b2x:
    1. 930907Domain d2b2xl1: 2b2x L:2-106 [127750]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
    2. 930908Domain d2b2xm1: 2b2x M:2-106 [127752]
      Other proteins in same PDB: d2b2xa1, d2b2xb1, d2b2xl2, d2b2xm2
      automatically matched to d1dqdl1
      complexed with mg; mutant
  23. Domain(s) for 2bmk:
    1. 930905Domain d2bmka1: 2bmk A:1-107 [128798]
      Other proteins in same PDB: d2bmka2, d2bmkb1, d2bmkb2, d2bmkh1, d2bmkh2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
    2. 930906Domain d2bmkl1: 2bmk L:1-107 [128800]
      Other proteins in same PDB: d2bmka2, d2bmkb1, d2bmkb2, d2bmkh1, d2bmkh2, d2bmkl2
      automatically matched to d1dqdl1
      complexed with iod, pdd
  24. Domain(s) for 2exw:
    1. 930944Domain d2exwd1: 2exw D:1-105 [132568]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
    2. 930945Domain d2exwf1: 2exw F:1-105 [132570]
      Other proteins in same PDB: d2exwa1, d2exwb1, d2exwd2, d2exwf2
      automatically matched to d1dqdl1
  25. Domain(s) for 2exy:
    1. 930970Domain d2exyd1: 2exy D:1-105 [132574]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
    2. 930971Domain d2exyf1: 2exy F:1-105 [132576]
      Other proteins in same PDB: d2exya1, d2exyb1, d2exyd2, d2exyf2
      automatically matched to d1dqdl1
      mutant
  26. Domain(s) for 2ez0:
    1. 930962Domain d2ez0d1: 2ez0 D:1-105 [132606]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930963Domain d2ez0f1: 2ez0 F:1-105 [132608]
      Other proteins in same PDB: d2ez0a1, d2ez0b1, d2ez0d2, d2ez0f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  27. Domain(s) for 2fec:
    1. 930966Domain d2fecl1: 2fec L:1-105 [133329]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
    2. 930967Domain d2feco1: 2fec O:1-105 [133331]
      Other proteins in same PDB: d2feca1, d2fecb1, d2fecl2, d2feco2
      automatically matched to d1dqdl1
      mutant
  28. Domain(s) for 2fed:
    1. 930934Domain d2fedd1: 2fed D:1-105 [133333]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
    2. 930935Domain d2fedf1: 2fed F:1-105 [133335]
      Other proteins in same PDB: d2feda1, d2fedb1, d2fedd2, d2fedf2
      automatically matched to d1dqdl1
      mutant
  29. Domain(s) for 2fee:
    1. 930942Domain d2feel1: 2fee L:1-105 [133339]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
    2. 930943Domain d2feeo1: 2fee O:1-105 [133341]
      Other proteins in same PDB: d2feea1, d2feeb1, d2feel2, d2feeo2
      automatically matched to d1dqdl1
  30. Domain(s) for 2h2p:
    1. 930950Domain d2h2pd1: 2h2p D:1-105 [136018]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
    2. 930951Domain d2h2pf1: 2h2p F:1-105 [136020]
      Other proteins in same PDB: d2h2pa1, d2h2pb1, d2h2pd2, d2h2pf2
      automatically matched to d1dqdl1
      complexed with sek
  31. Domain(s) for 2h2s:
    1. 930960Domain d2h2sd1: 2h2s D:1-105 [136024]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
    2. 930961Domain d2h2sf1: 2h2s F:1-105 [136026]
      Other proteins in same PDB: d2h2sa1, d2h2sb1, d2h2sd2, d2h2sf2
      automatically matched to d1dqdl1
      complexed with sek; mutant
  32. Domain(s) for 2hlf:
    1. 930958Domain d2hlfd1: 2hlf D:1-105 [136566]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930959Domain d2hlff1: 2hlf F:1-105 [136568]
      Other proteins in same PDB: d2hlfa1, d2hlfb1, d2hlfd2, d2hlff2
      automatically matched to d1dqdl1
      complexed with br; mutant
  33. Domain(s) for 2ht2:
    1. 930956Domain d2ht2d1: 2ht2 D:1-105 [136730]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930957Domain d2ht2f1: 2ht2 F:1-105 [136732]
      Other proteins in same PDB: d2ht2a1, d2ht2b1, d2ht2d2, d2ht2f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  34. Domain(s) for 2ht3:
    1. 930952Domain d2ht3d1: 2ht3 D:1-105 [136734]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930953Domain d2ht3f1: 2ht3 F:1-105 [136736]
      Other proteins in same PDB: d2ht3a1, d2ht3b1, d2ht3d2, d2ht3f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  35. Domain(s) for 2ht4:
    1. 930936Domain d2ht4d1: 2ht4 D:1-105 [136738]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930937Domain d2ht4f1: 2ht4 F:1-105 [136740]
      Other proteins in same PDB: d2ht4a1, d2ht4b1, d2ht4d2, d2ht4f2
      automatically matched to d1dqdl1
      complexed with br; mutant
  36. Domain(s) for 2htk:
    1. 930946Domain d2htkd1: 2htk D:1-105 [136745]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930947Domain d2htkf1: 2htk F:1-105 [136747]
      Other proteins in same PDB: d2htka1, d2htkb1, d2htkd2, d2htkf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  37. Domain(s) for 2htl:
    1. 930948Domain d2htld1: 2htl D:1-105 [136749]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
    2. 930949Domain d2htlf1: 2htl F:1-105 [136751]
      Other proteins in same PDB: d2htla1, d2htlb1, d2htld2, d2htlf2
      automatically matched to d1dqdl1
      complexed with br; mutant
  38. Domain(s) for 2iff:
  39. Domain(s) for 2j4w:
  40. Domain(s) for 2j5l:
  41. Domain(s) for 2osl:
    1. 930924Domain d2oslb1: 2osl B:2-106 [139296]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
    2. 930925Domain d2osll1: 2osl L:2-106 [139298]
      Other proteins in same PDB: d2oslb2, d2osll2
      automatically matched to d1dqdl1
  42. Domain(s) for 2z91:
    1. 930918Domain d2z91b1: 2z91 B:1-107 [154220]
      Other proteins in same PDB: d2z91a1, d2z91b2, d2z91c1, d2z91d2
      automatically matched to d1dqdl1
    2. 930919Domain d2z91d1: 2z91 D:1-107 [154223]
      Other proteins in same PDB: d2z91a1, d2z91b2, d2z91c1, d2z91d2
      automatically matched to d1dqdl1
  43. Domain(s) for 2z92:
  44. Domain(s) for 2z93:

More info for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: