Lineage for Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2740696Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2741196Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] [88527] (13 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]:

  1. Domain(s) for 15c8:
  2. Domain(s) for 1aif:
    1. 2741207Domain d1aifa1: 1aif A:1-109 [20076]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
    2. 2741208Domain d1aifl1: 1aif L:1-109 [20078]
      Other proteins in same PDB: d1aifa2, d1aifb1, d1aifb2, d1aifh1, d1aifh2, d1aifl2
      part of Fab 409.5.3
  3. Domain(s) for 1cf8:
  4. Domain(s) for 1fig:
  5. Domain(s) for 1hq4:
    1. 2741202Domain d1hq4a1: 1hq4 A:1-107 [83621]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
    2. 2741203Domain d1hq4c1: 1hq4 C:1-107 [83625]
      Other proteins in same PDB: d1hq4a2, d1hq4b1, d1hq4b2, d1hq4c2, d1hq4d1, d1hq4d2
      part of catalytic Fab HA-19A4 with a polyene cyclase activity
      complexed with cd
  6. Domain(s) for 1iai:
  7. Domain(s) for 1ken:
    1. 2741211Domain d1kenl1: 1ken L:1-108 [72381]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
    2. 2741212Domain d1kenu1: 1ken U:1-108 [72385]
      Other proteins in same PDB: d1kena_, d1kenb_, d1kenc_, d1kend_, d1kene_, d1kenf_, d1kenh1, d1kenh2, d1kenl2, d1kent1, d1kent2, d1kenu2
      part of Fab against influenza virus hemagglutinin
  8. Domain(s) for 1ob1:
    1. 2741209Domain d1ob1a1: 1ob1 A:1-106A [86748]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1c3, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2, d1ob1f3
      part of anti-Pf MSP1 Fab
      complexed with cac
    2. 2741210Domain d1ob1d1: 1ob1 D:1-106A [86754]
      Other proteins in same PDB: d1ob1a2, d1ob1b1, d1ob1b2, d1ob1c1, d1ob1c2, d1ob1c3, d1ob1d2, d1ob1e1, d1ob1e2, d1ob1f1, d1ob1f2, d1ob1f3
      part of anti-Pf MSP1 Fab
      complexed with cac
  9. Domain(s) for 1orq:
  10. Domain(s) for 1ors:
  11. Domain(s) for 25c8:
  12. Domain(s) for 2a0l:
    1. 2741213Domain d2a0lc1: 2a0l C:1-105 [125956]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
    2. 2741214Domain d2a0le1: 2a0l E:1-105 [125958]
      Other proteins in same PDB: d2a0la1, d2a0lb1, d2a0ld1, d2a0lf1
      automatically matched to d1orsa1
      complexed with k
  13. Domain(s) for 35c8:

More info for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 3.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: