Lineage for Species: Mouse (Mus musculus), cluster 1.2

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287964Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] [88525] (22 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1.2:

  1. Domain(s) for 1a3r:
  2. Domain(s) for 1a5f:
  3. Domain(s) for 1ap2:
    1. 287985Domain d1ap2a_: 1ap2 A: [20182]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
    2. 287986Domain d1ap2c_: 1ap2 C: [20184]
      Other proteins in same PDB: d1ap2b_, d1ap2d_
      part of P-glycoprotein-specific scFv C219
  4. Domain(s) for 1bbd:
  5. Domain(s) for 1frg:
  6. Domain(s) for 1h3p:
  7. Domain(s) for 1hil:
    1. 287969Domain d1hila1: 1hil A:1-108 [19786]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
    2. 287970Domain d1hilc1: 1hil C:1-108 [19788]
      Other proteins in same PDB: d1hila2, d1hilb1, d1hilb2, d1hilc2, d1hild1, d1hild2
      part of Fab 17/9
  8. Domain(s) for 1him:
    1. 287991Domain d1himh1: 1him H:1-108 [19793]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
    2. 287992Domain d1himj1: 1him J:1-108 [19795]
      Other proteins in same PDB: d1himh2, d1himj2, d1himl1, d1himl2, d1himm1, d1himm2
      part of Fab 17/9; chain identifiers are mixed up
      complexed with nh2
  9. Domain(s) for 1hin:
  10. Domain(s) for 1ifh:
  11. Domain(s) for 1il1:
  12. Domain(s) for 1mcp:
  13. Domain(s) for 1mhh:
    1. 287971Domain d1mhha1: 1mhh A:1-107 [79119]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
    2. 287972Domain d1mhhc1: 1mhh C:1-107 [79123]
      Other proteins in same PDB: d1mhha2, d1mhhb1, d1mhhb2, d1mhhc2, d1mhhd1, d1mhhd2, d1mhhe_, d1mhhf_
      part of anti-HCV Fab 19D9D6
      complexed with aea, edo; mutant
  14. Domain(s) for 1n64:
  15. Domain(s) for 1nlb:
  16. Domain(s) for 1pkq:
    1. 287997Domain d1pkqa1: 1pkq A:1-107 [88148]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
    2. 287998Domain d1pkqf1: 1pkq F:1-107 [88153]
      Other proteins in same PDB: d1pkqa2, d1pkqb1, d1pkqb2, d1pkqe_, d1pkqf2, d1pkqg1, d1pkqg2, d1pkqj_
      part of humanized Fab 8-18c5
  17. Domain(s) for 1sbs:
  18. Domain(s) for 2ap2:
    1. 287983Domain d2ap2a_: 2ap2 A: [20178]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
    2. 287984Domain d2ap2c_: 2ap2 C: [20180]
      Other proteins in same PDB: d2ap2b_, d2ap2d_
      part of P-glycoprotein-specific scFv C219
  19. Domain(s) for 2imm:
    • 287966Domain d2imm__: 2imm - [19857]
      VL domain only of MCPC603
      complexed with ace, so4
  20. Domain(s) for 2mcp:
  21. Domain(s) for 43c9:
    1. 287975Domain d43c9a_: 43c9 A: [20386]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    2. 287976Domain d43c9c_: 43c9 C: [20388]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    3. 287977Domain d43c9e_: 43c9 E: [20390]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
    4. 287978Domain d43c9g_: 43c9 G: [20392]
      Other proteins in same PDB: d43c9b_, d43c9d_, d43c9f_, d43c9h_
      part of sterolytic and amidolytic Fv 43c9
  22. Domain(s) for 43ca:
    1. 287979Domain d43caa_: 43ca A: [20394]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    2. 287980Domain d43cac_: 43ca C: [20396]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    3. 287981Domain d43cae_: 43ca E: [20398]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
    4. 287982Domain d43cag_: 43ca G: [20400]
      Other proteins in same PDB: d43cab_, d43cad_, d43caf_, d43cah_
      part of sterolytic and amidolytic Fv 43c9
      complexed with npo

More info for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 1.2 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: