Lineage for Species: Mouse (Mus musculus), cluster 1.1

  1. Root: SCOP 1.67
  2. 362614Class b: All beta proteins [48724] (141 folds)
  3. 362615Fold b.1: Immunoglobulin-like beta-sandwich [48725] (22 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 362616Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 362617Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (24 proteins)
  6. 363425Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 363551Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (121 PDB entries)

PDB entries in Species: Mouse (Mus musculus), cluster 1.1:

  1. Domain(s) for 1a3l:
  2. Domain(s) for 1a4j:
    1. 363672Domain d1a4ja1: 1a4j A:1-112 [20232]
      Other proteins in same PDB: d1a4ja2, d1a4jb1, d1a4jb2, d1a4jh1, d1a4jh2, d1a4jl2
      part of humanized Diels-Alder catalytic Fab; germline precursor
    2. 363673Domain d1a4jl1: 1a4j L:1-112 [20230]
      Other proteins in same PDB: d1a4ja2, d1a4jb1, d1a4jb2, d1a4jh1, d1a4jh2, d1a4jl2
  3. Domain(s) for 1a4k:
    1. 363647Domain d1a4ka1: 1a4k A:1-112 [20236]
      Other proteins in same PDB: d1a4ka2, d1a4kb1, d1a4kb2, d1a4kh1, d1a4kh2, d1a4kl2
      part of humanized Diels-Alder catalytic Fab
      complexed with cd, fra
    2. 363648Domain d1a4kl1: 1a4k L:1-112 [20234]
      Other proteins in same PDB: d1a4ka2, d1a4kb1, d1a4kb2, d1a4kh1, d1a4kh2, d1a4kl2
  4. Domain(s) for 1ae6:
  5. Domain(s) for 1axt:
  6. Domain(s) for 1bfv:
  7. Domain(s) for 1bln:
    1. 363689Domain d1blna1: 1bln A:1-107 [20330]
      Other proteins in same PDB: d1blna2, d1blnb1, d1blnb2, d1blnc2, d1blnd1, d1blnd2
    2. 363690Domain d1blnc1: 1bln C:1-107 [20332]
      Other proteins in same PDB: d1blna2, d1blnb1, d1blnb2, d1blnc2, d1blnd1, d1blnd2
      part of anti-P-glycoprotein Fab MRK-16
  8. Domain(s) for 1c1e:
  9. Domain(s) for 1cbv:
  10. Domain(s) for 1cfv:
  11. Domain(s) for 1cgs:
  12. Domain(s) for 1cl7:
  13. Domain(s) for 1cly:
  14. Domain(s) for 1clz:
  15. Domain(s) for 1cr9:
  16. Domain(s) for 1cu4:
  17. Domain(s) for 1dba:
  18. Domain(s) for 1dbb:
  19. Domain(s) for 1dbj:
  20. Domain(s) for 1dbk:
  21. Domain(s) for 1dbm:
  22. Domain(s) for 1dlf:
  23. Domain(s) for 1dsf:
    • 363604Domain d1dsfl_: 1dsf L: [20246]
      Other proteins in same PDB: d1dsfh_
      part of anticancer Fv B1; disulfide-stabilized
      mutant
  24. Domain(s) for 1ehl:
  25. Domain(s) for 1f3d:
    1. 363567Domain d1f3dj1: 1f3d J:1-107 [20461]
      Other proteins in same PDB: d1f3dh1, d1f3dh2, d1f3dj2, d1f3dk1, d1f3dk2, d1f3dl2
      part of catalytic Fab 4B2
      complexed with so4, tpm
    2. 363568Domain d1f3dl1: 1f3d L:1-107 [20460]
      Other proteins in same PDB: d1f3dh1, d1f3dh2, d1f3dj2, d1f3dk1, d1f3dk2, d1f3dl2
  26. Domain(s) for 1f8t:
  27. Domain(s) for 1f90:
  28. Domain(s) for 1fl3:
    1. 363650Domain d1fl3b1: 1fl3 B:2-113 [20487]
      Other proteins in same PDB: d1fl3a1, d1fl3a2, d1fl3b2, d1fl3h1, d1fl3h2, d1fl3l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 363651Domain d1fl3l1: 1fl3 L:2-113 [20485]
      Other proteins in same PDB: d1fl3a1, d1fl3a2, d1fl3b2, d1fl3h1, d1fl3h2, d1fl3l2
  29. Domain(s) for 1fl5:
    1. 363613Domain d1fl5a1: 1fl5 A:1-107 [65015]
      Other proteins in same PDB: d1fl5a2, d1fl5b1, d1fl5b2, d1fl5h1, d1fl5h2, d1fl5l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with so4; mutant
    2. 363614Domain d1fl5l1: 1fl5 L:1-107 [65021]
      Other proteins in same PDB: d1fl5a2, d1fl5b1, d1fl5b2, d1fl5h1, d1fl5h2, d1fl5l2
  30. Domain(s) for 1fl6:
    1. 363675Domain d1fl6a1: 1fl6 A:1-107 [65023]
      Other proteins in same PDB: d1fl6a2, d1fl6b1, d1fl6b2, d1fl6h1, d1fl6h2, d1fl6l2
      part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
      complexed with aah; mutant
    2. 363676Domain d1fl6l1: 1fl6 L:1-107 [65029]
      Other proteins in same PDB: d1fl6a2, d1fl6b1, d1fl6b2, d1fl6h1, d1fl6h2, d1fl6l2
  31. Domain(s) for 1flr:
  32. Domain(s) for 1fpt:
  33. Domain(s) for 1hyx:
  34. Domain(s) for 1hyy:
  35. Domain(s) for 1i9i:
  36. Domain(s) for 1i9j:
  37. Domain(s) for 1igf:
    1. 363667Domain d1igfl1: 1igf L:1-107 [19812]
      Other proteins in same PDB: d1igfh1, d1igfh2, d1igfj1, d1igfj2, d1igfl2, d1igfm2
    2. 363668Domain d1igfm1: 1igf M:1-107 [19814]
      Other proteins in same PDB: d1igfh1, d1igfh2, d1igfj1, d1igfj2, d1igfl2, d1igfm2
      part of Fab B13I2
      complexed with nag
  38. Domain(s) for 1igi:
  39. Domain(s) for 1igj:
    1. 363638Domain d1igja1: 1igj A:1-107 [19818]
      Other proteins in same PDB: d1igja2, d1igjb1, d1igjb2, d1igjc2, d1igjd1, d1igjd2
    2. 363639Domain d1igjc1: 1igj C:1-107 [19820]
      Other proteins in same PDB: d1igja2, d1igjb1, d1igjb2, d1igjc2, d1igjd1, d1igjd2
      part of Fab 26-10
      complexed with dgx
  40. Domain(s) for 1jgu:
  41. Domain(s) for 1jgv:
  42. Domain(s) for 1jp5:
    1. 363669Domain d1jp5a1: 1jp5 A:1-112 [67001]
      Other proteins in same PDB: d1jp5a2, d1jp5b2
    2. 363670Domain d1jp5b1: 1jp5 B:1-112 [67003]
      Other proteins in same PDB: d1jp5a2, d1jp5b2
      part of scFv 1695; complexed with the epitope peptide from HIV-1 protease
  43. Domain(s) for 1keg:
  44. Domain(s) for 1kel:
  45. Domain(s) for 1kem:
  46. Domain(s) for 1kfa:
    1. 363684Domain d1kfal1: 1kfa L:1-112 [77365]
      Other proteins in same PDB: d1kfah1, d1kfah2, d1kfai1, d1kfai2, d1kfal2, d1kfam2
    2. 363685Domain d1kfam1: 1kfa M:1-112 [77367]
      Other proteins in same PDB: d1kfah1, d1kfah2, d1kfai1, d1kfai2, d1kfal2, d1kfam2
      part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
      complexed with ga4
  47. Domain(s) for 1kn2:
  48. Domain(s) for 1kn4:
  49. Domain(s) for 1ktr:
  50. Domain(s) for 1l7s:
  51. Domain(s) for 1l7t:
  52. Domain(s) for 1lmk:
    1. 363656Domain d1lmka2: 1lmk A:201-312 [20035]
      Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1
    2. 363657Domain d1lmkc2: 1lmk C:201-312 [20037]
      Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1
    3. 363658Domain d1lmke2: 1lmk E:201-312 [20039]
      Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1
    4. 363659Domain d1lmkg2: 1lmk G:201-312 [20041]
      Other proteins in same PDB: d1lmka1, d1lmkc1, d1lmke1, d1lmkg1
      part of scFv diabody L5MK16
  53. Domain(s) for 1lo0:
    1. 363596Domain d1lo0l1: 1lo0 L:1-112 [74117]
      Other proteins in same PDB: d1lo0h1, d1lo0h2, d1lo0l2, d1lo0x2, d1lo0y1, d1lo0y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with bc1
    2. 363597Domain d1lo0x1: 1lo0 X:1-112 [74119]
      Other proteins in same PDB: d1lo0h1, d1lo0h2, d1lo0l2, d1lo0x2, d1lo0y1, d1lo0y2
  54. Domain(s) for 1lo2:
    1. 363598Domain d1lo2l1: 1lo2 L:1-112 [74125]
      Other proteins in same PDB: d1lo2h1, d1lo2h2, d1lo2l2, d1lo2x2, d1lo2y1, d1lo2y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with ox1
    2. 363599Domain d1lo2x1: 1lo2 X:1-112 [74127]
      Other proteins in same PDB: d1lo2h1, d1lo2h2, d1lo2l2, d1lo2x2, d1lo2y1, d1lo2y2
  55. Domain(s) for 1lo3:
    1. 363623Domain d1lo3l1: 1lo3 L:1-112 [74133]
      Other proteins in same PDB: d1lo3h1, d1lo3h2, d1lo3l2, d1lo3x2, d1lo3y1, d1lo3y2
      part of retro Diels-Alder catalytic Fab 9D9
      complexed with an1
    2. 363624Domain d1lo3x1: 1lo3 X:1-112 [74135]
      Other proteins in same PDB: d1lo3h1, d1lo3h2, d1lo3l2, d1lo3x2, d1lo3y1, d1lo3y2
  56. Domain(s) for 1lo4:
  57. Domain(s) for 1m71:
  58. Domain(s) for 1m7d:
  59. Domain(s) for 1m7i:
  60. Domain(s) for 1maj:
  61. Domain(s) for 1mak:
  62. Domain(s) for 1mh5:
    1. 363610Domain d1mh5a1: 1mh5 A:1-107 [91266]
      Other proteins in same PDB: d1mh5a2, d1mh5b1, d1mh5b2, d1mh5h1, d1mh5h2, d1mh5l2
    2. 363611Domain d1mh5l1: 1mh5 L:1-107 [91272]
      Other proteins in same PDB: d1mh5a2, d1mh5b1, d1mh5b2, d1mh5h1, d1mh5h2, d1mh5l2
      part of the esterolytic Fab ms6-164
      complexed with hal, so4
  63. Domain(s) for 1mie:
  64. Domain(s) for 1mj7:
  65. Domain(s) for 1mj8:
  66. Domain(s) for 1mjj:
    1. 363578Domain d1mjja1: 1mjj A:1-107 [91294]
      Other proteins in same PDB: d1mjja2, d1mjjb1, d1mjjb2, d1mjjh1, d1mjjh2, d1mjjl2
    2. 363579Domain d1mjjl1: 1mjj L:1-107 [91300]
      Other proteins in same PDB: d1mjja2, d1mjjb1, d1mjjb2, d1mjjh1, d1mjjh2, d1mjjl2
      part of the esterolytic Fab ms6-164
      complexed with hal, so4
  67. Domain(s) for 1mju:
  68. Domain(s) for 1mnu:
  69. Domain(s) for 1mpa:
  70. Domain(s) for 1mrc:
  71. Domain(s) for 1mrd:
  72. Domain(s) for 1mre:
  73. Domain(s) for 1mrf:
  74. Domain(s) for 1n4x:
    1. 363563Domain d1n4xl_: 1n4x L: [85326]
      Other proteins in same PDB: d1n4xh_, d1n4xi_
    2. 363564Domain d1n4xm_: 1n4x M: [85327]
      Other proteins in same PDB: d1n4xh_, d1n4xi_
      part of scFv 1695
      complexed with cl
  75. Domain(s) for 1nak:
    1. 363691Domain d1nakl1: 1nak L:1-107 [91757]
      Other proteins in same PDB: d1nakh1, d1nakh2, d1naki1, d1naki2, d1nakl2, d1nakm2
    2. 363692Domain d1nakm1: 1nak M:1-107 [91759]
      Other proteins in same PDB: d1nakh1, d1nakh2, d1naki1, d1naki2, d1nakl2, d1nakm2
      part of Fab 83.1 against HIV-1 gp120
  76. Domain(s) for 1nbv:
  77. Domain(s) for 1ncw:
  78. Domain(s) for 1nd0:
    1. 363660Domain d1nd0a1: 1nd0 A:1-107 [85559]
      Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2
    2. 363661Domain d1nd0c1: 1nd0 C:1-107 [85563]
      Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2
    3. 363662Domain d1nd0e1: 1nd0 E:1-107 [85567]
      Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2
    4. 363663Domain d1nd0g1: 1nd0 G:1-107 [85571]
      Other proteins in same PDB: d1nd0a2, d1nd0b1, d1nd0b2, d1nd0c2, d1nd0d1, d1nd0d2, d1nd0e2, d1nd0f1, d1nd0f2, d1nd0g2, d1nd0h1, d1nd0h2
      part of cationic cyclization catalytic Fab 4C6
      complexed with dp4, so4
  79. Domain(s) for 1nld:
  80. Domain(s) for 1nqb:
    1. 363574Domain d1nqba2: 1nqb A:121-233 [20043]
      Other proteins in same PDB: d1nqba1, d1nqbc1
    2. 363575Domain d1nqbc2: 1nqb C:121-233 [20045]
      Other proteins in same PDB: d1nqba1, d1nqbc1
      part of scFv trivalent antibody; N-terminal, VH domain is from B1-8 antibody (1A6U CH H); C-terminal, VL domain is from NQ11 antibody
  81. Domain(s) for 1plg:
  82. Domain(s) for 1pz5:
  83. Domain(s) for 1q72:
  84. Domain(s) for 1qfu:
  85. Domain(s) for 1qkz:
  86. Domain(s) for 1qyg:
  87. Domain(s) for 1rfd:
  88. Domain(s) for 1riu:
  89. Domain(s) for 1riv:
  90. Domain(s) for 1rmf:
  91. Domain(s) for 1ru9:
  92. Domain(s) for 1rua:
  93. Domain(s) for 1ruk:
  94. Domain(s) for 1rul:
  95. Domain(s) for 1rum:
  96. Domain(s) for 1rup:
  97. Domain(s) for 1ruq:
  98. Domain(s) for 1rur:
  99. Domain(s) for 1tet:
  100. Domain(s) for 1ub5:
    1. 363605Domain d1ub5b1: 1ub5 B:1-113 [99145]
      Other proteins in same PDB: d1ub5a1, d1ub5a2, d1ub5b2, d1ub5h1, d1ub5h2, d1ub5l2
      part of blue fluorescent Fab 19G2
      complexed with spb
    2. 363606Domain d1ub5l1: 1ub5 L:1-113 [99149]
      Other proteins in same PDB: d1ub5a1, d1ub5a2, d1ub5b2, d1ub5h1, d1ub5h2, d1ub5l2
  101. Domain(s) for 1ub6:
    1. 363632Domain d1ub6b1: 1ub6 B:2-113 [99153]
      Other proteins in same PDB: d1ub6a1, d1ub6a2, d1ub6b2, d1ub6h1, d1ub6h2, d1ub6l2
      part of blue fluorescent Fab 19G2
    2. 363633Domain d1ub6l1: 1ub6 L:2-113 [99157]
      Other proteins in same PDB: d1ub6a1, d1ub6a2, d1ub6b2, d1ub6h1, d1ub6h2, d1ub6l2
  102. Domain(s) for 1ucb:
  103. Domain(s) for 1yec:
  104. Domain(s) for 1yed:
    1. 363693Domain d1yeda1: 1yed A:1-107 [20150]
      Other proteins in same PDB: d1yeda2, d1yedb1, d1yedb2, d1yedh1, d1yedh2, d1yedl2
      part of Fab D2.4
      complexed with pnb
    2. 363694Domain d1yedl1: 1yed L:1-107 [20148]
      Other proteins in same PDB: d1yeda2, d1yedb1, d1yedb2, d1yedh1, d1yedh2, d1yedl2
  105. Domain(s) for 1yee:
  106. Domain(s) for 1yef:
  107. Domain(s) for 1yeg:
  108. Domain(s) for 1yeh:
  109. Domain(s) for 1yei:
  110. Domain(s) for 1yej:
  111. Domain(s) for 1yek:
  112. Domain(s) for 2bfv:
  113. Domain(s) for 2cgr:
  114. Domain(s) for 2dbl:
  115. Domain(s) for 2dlf:
  116. Domain(s) for 2h1p:
  117. Domain(s) for 2igf:
  118. Domain(s) for 2jel:
  119. Domain(s) for 2mpa:
  120. Domain(s) for 2pcp:
    1. 363636Domain d2pcpa1: 2pcp A:1-107 [20370]
      Other proteins in same PDB: d2pcpa2, d2pcpb1, d2pcpb2, d2pcpc2, d2pcpd1, d2pcpd2
    2. 363637Domain d2pcpc1: 2pcp C:1-107 [20372]
      Other proteins in same PDB: d2pcpa2, d2pcpb1, d2pcpb2, d2pcpc2, d2pcpd1, d2pcpd2
      part of Fab 6B5
      complexed with 1pc
  121. Domain(s) for 4fab:

More info for Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: