Lineage for Species: Human (Homo sapiens), cluster 1

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287780Species Human (Homo sapiens), cluster 1 [TaxId:9606] [88520] (16 PDB entries)

PDB entries in Species: Human (Homo sapiens), cluster 1:

  1. Domain(s) for 1ar2:
    • 287812Domain d1ar2__: 1ar2 - [20522]
      VL of Bence-Jones protein REI; disulfide-free mutant
  2. Domain(s) for 1b0w:
    1. 287785Domain d1b0wa_: 1b0w A: [20532]
    2. 287786Domain d1b0wb_: 1b0w B: [20533]
    3. 287787Domain d1b0wc_: 1b0w C: [20534]
      VL dimer of Bence-Jones protein BRE
  3. Domain(s) for 1b6d:
    1. 287805Domain d1b6da1: 1b6d A:1-107 [20603]
      Other proteins in same PDB: d1b6da2, d1b6db2
    2. 287806Domain d1b6db1: 1b6d B:1-107 [20604]
      Other proteins in same PDB: d1b6da2, d1b6db2
      part of Bence-Jones protein DEL
  4. Domain(s) for 1bre:
    1. 287793Domain d1brea_: 1bre A: [20538]
    2. 287794Domain d1breb_: 1bre B: [20539]
    3. 287795Domain d1brec_: 1bre C: [20540]
    4. 287796Domain d1bred_: 1bre D: [20541]
    5. 287797Domain d1bree_: 1bre E: [20542]
    6. 287798Domain d1bref_: 1bre F: [20543]
      VL dimer of Bence-Jones protein BRE
  5. Domain(s) for 1bww:
    1. 287781Domain d1bwwa_: 1bww A: [20518]
    2. 287782Domain d1bwwb_: 1bww B: [20519]
      VL dimer of Bence-Jones protein REI
      mutant
  6. Domain(s) for 1dee:
    1. 287807Domain d1deea1: 1dee A:1-107 [20442]
      Other proteins in same PDB: d1deea2, d1deeb1, d1deeb2, d1deec2, d1deed1, d1deed2, d1deee2, d1deef1, d1deef2, d1deeg_, d1deeh_
    2. 287808Domain d1deec1: 1dee C:1001-1107 [20444]
      Other proteins in same PDB: d1deea2, d1deeb1, d1deeb2, d1deec2, d1deed1, d1deed2, d1deee2, d1deef1, d1deef2, d1deeg_, d1deeh_
    3. 287809Domain d1deee1: 1dee E:2001-2107 [20446]
      Other proteins in same PDB: d1deea2, d1deeb1, d1deeb2, d1deec2, d1deed1, d1deed2, d1deee2, d1deef1, d1deef2, d1deeg_, d1deeh_
      part of IgM RF 2A2
  7. Domain(s) for 1dfb:
  8. Domain(s) for 1dql:
  9. Domain(s) for 1f6l:
  10. Domain(s) for 1hez:
    1. 287810Domain d1heza1: 1hez A:1-107 [60983]
      Other proteins in same PDB: d1heza2, d1hezb1, d1hezb2, d1hezc2, d1hezd1, d1hezd2, d1heze_
    2. 287811Domain d1hezc1: 1hez C:1-107 [60987]
      Other proteins in same PDB: d1heza2, d1hezb1, d1hezb2, d1hezc2, d1hezd1, d1hezd2, d1heze_
      part of IgM RF 2A2
      complexed with imd
  11. Domain(s) for 1igm:
  12. Domain(s) for 1jv5:
  13. Domain(s) for 1qp1:
    1. 287789Domain d1qp1a_: 1qp1 A: [20535]
    2. 287790Domain d1qp1b_: 1qp1 B: [20536]
    3. 287791Domain d1qp1c_: 1qp1 C: [20537]
      VL dimer of Bence-Jones protein BRE
  14. Domain(s) for 1rei:
    1. 287799Domain d1reia_: 1rei A: [20520]
    2. 287800Domain d1reib_: 1rei B: [20521]
      VL dimer of Bence-Jones protein REI
  15. Domain(s) for 1vge:
  16. Domain(s) for 1wtl:
    1. 287783Domain d1wtla_: 1wtl A: [20530]
    2. 287784Domain d1wtlb_: 1wtl B: [20531]
      VL dimer of Bence-Jones protein WAT

More info for Species Human (Homo sapiens), cluster 1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Human (Homo sapiens), cluster 1 [TaxId:9606] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: