SCOPe 2.04: Domain d1ubjs_: 1ubj S:

Lineage for d1ubjs_ (1ubj S:)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.19: HydA/Nqo6-like [56769] (1 superfamily)
   2 domains: (1) alpa/beta; (2) Fe-S cluster-bound

4. Superfamily e.19.1: HydA/Nqo6-like [56770] (3 families)

5. Family e.19.1.1: Nickel-iron hydrogenase, small subunit [56771] (2 proteins)

6. Protein Nickel-iron hydrogenase, small subunit [56772] (5 species)

7. Species Desulfovibrio vulgaris [TaxId:881] [56774] (11 PDB entries)

8. Domain d1ubjs_: 1ubj S: [88421]
   Other proteins in same PDB: d1ubjl_
   complexed with cmo, f3s, fne, mg, sf4

Details for d1ubjs_

PDB Entry: 1ubj, 1.35 Å

PDB Description: three-dimensional structure of the carbon monoxide complex of [nife]hydrogenase from desulufovibrio vulgaris miyazaki f

PDB Compounds: (S:) Periplasmic [NiFe] hydrogenase Small subunit

SCOPe Domain Sequences for d1ubjs_:

Sequence; same for both SEQRES and ATOM records:

>d1ubjs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}
lmgprrpsvvylhnaectgcsesvlrafepyidtlildtlsldyhetimaaagdaaeaal
eqavnsphgfiavveggiptaangiygkvanhtmldicsrilpkaqaviaygtcatfggv
qaakpnptgakgvndalkhlgvkainiagcppnpynlvgtivyylknkaapeldslnrpt
mffgqtvheqcprlphfdagefapsfeseearkgwclyelgckgpvtmnncpkikfnqtn
wpvdaghpcigcsepdfwdamtpfyqn

Timeline for d1ubjs_:

• d1ubjs_ first appeared in SCOP 1.65
  
• d1ubjs_ appears in SCOPe 2.03
  
• d1ubjs_ appears in SCOPe 2.05
  
• d1ubjs_ appears in the current release, SCOPe 2.08