SCOPe 2.06: Domain d1om3l1: 1om3 L:2-107

Lineage for d1om3l1 (1om3 L:2-107)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

6. Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
   VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

7. Species Engineered (including hybrid species) [88533] (61 PDB entries)
   SQ NA # humanized antidoby; bactericidal Fab-h6831 ! SQ NA # Humanized antibody ! SQ NA # humanized antibody ! SQ NA # engineered antibody

8. Domain d1om3l1: 1om3 L:2-107 [87063]
   Other proteins in same PDB: d1om3h1, d1om3h2, d1om3k1, d1om3k2, d1om3l2, d1om3m2
   part of engineered Fab 2G12

Details for d1om3l1

PDB Entry: 1om3, 2.2 Å

PDB Description: fab 2g12 unliganded

PDB Compounds: (L:) FAB 2G12, light chain

SCOPe Domain Sequences for d1om3l1:

Sequence; same for both SEQRES and ATOM records:

>d1om3l1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}
vvmtqspstlsasvgdtititcrasqsietwlawyqqkpgkapklliykastlktgvpsr
fsgsgsgteftltisglqfddfatyhcqhyagysatfgqgtrveik

Timeline for d1om3l1:

• d1om3l1 first appeared in SCOP 1.65
  
• d1om3l1 appears in SCOPe 2.05
  
• d1om3l1 last appears in SCOPe 2.07