Lineage for d1ms5b1 (1ms5 B:409-632)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 663169Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
    sandwich; 12-14 strands in 2 sheets; complex topology
  4. 663170Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (25 families) (S)
  5. 664233Family b.29.1.15: Trypanosoma sialidase, C-terminal domain [82038] (1 protein)
  6. 664234Protein Trypanosoma sialidase, C-terminal domain [82039] (2 species)
  7. 664235Species Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId:5693] [89271] (11 PDB entries)
  8. 664248Domain d1ms5b1: 1ms5 B:409-632 [85078]
    Other proteins in same PDB: d1ms5a2, d1ms5b2
    mutant

Details for d1ms5b1

PDB Entry: 1ms5 (more details), 2 Å

PDB Description: Triclinic form of Trypanosoma cruzi trans-sialidase, soaked with N-acetylneuraminyl-a-2,3-thio-galactoside (NA-S-Gal)
PDB Compounds: (B:) Trans-sialidase

SCOP Domain Sequences for d1ms5b1:

Sequence, based on SEQRES records: (download)

>d1ms5b1 b.29.1.15 (B:409-632) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
gcgpavttvglvgflshsatktewedayrcvnastanaervpnglkfagvgggalwpvsq
qgqnqryffanhaftlvasvtihevpkgaspllgasldssggkkllglsydkrhqwqpiy
gstpvtptgswemgkryhvvltmankigsvyidgeplegsgqtvvpdertpdishfyvgg
ykrsgmptdsrvtvnnvllynrqlnaeeirtlflsqdligteah

Sequence, based on observed residues (ATOM records): (download)

>d1ms5b1 b.29.1.15 (B:409-632) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
gcgpavttvglvgflshsatktewedayrcvnastanaervpnglkfagvgggalwpvsq
qgqnqryffanhaftlvasvtihevpkgaspllgasldssggkkllglsydkrhqwqpiy
gstpvtptgswemgkryhvvltmankigsvyidgeplegsgqtvvpertpdishfyvggy
krsgmptdsrvtvnnvllynrqlnaeeirtlflsqdligteah

SCOP Domain Coordinates for d1ms5b1:

Click to download the PDB-style file with coordinates for d1ms5b1.
(The format of our PDB-style files is described here.)

Timeline for d1ms5b1:

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Domains from same chain:
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d1ms5b2