Lineage for d1m7db1 (1m7d B:1-113)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287195Protein Immunoglobulin heavy chain variable domain, VH [88543] (19 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287270Species Mouse (Mus musculus), cluster 1 [TaxId:10090] [88548] (22 PDB entries)
  8. 287282Domain d1m7db1: 1m7d B:1-113 [84863]
    Other proteins in same PDB: d1m7da1, d1m7da2, d1m7db2
    part of Fab specific for Y lipopolysaccharide
    complexed with 1na, raa, rae

Details for d1m7db1

PDB Entry: 1m7d (more details), 2.3 Å

PDB Description: crystal structure of a monoclonal fab specific for shigella flexneri y lipopolysaccharide complexed with a trisaccharide
PDB Compounds: (B:)

SCOP Domain Sequences for d1m7db1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1m7db1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1}
evkveesggglvqpggsmklscvasgftfsnywmewvrqspekglewvaeirlksnnyat
hyaesvkgrftisrddskssvylqmnnlraedtgiyyctrggavgamdywgqgtsvtvss

SCOP Domain Coordinates for d1m7db1:

Click to download the PDB-style file with coordinates for d1m7db1.
(The format of our PDB-style files is described here.)

Timeline for d1m7db1:

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Domains from same chain:
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d1m7db2