Lineage for d1k2db1 (1k2d B:93-190)

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1105902Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 1107193Protein Class II MHC beta chain, C-terminal domain [88625] (6 species)
  7. 1107262Species Mouse (Mus musculus), I-A group [TaxId:10090] [88631] (16 PDB entries)
    probably orthologous to the human HLA-DQ group
  8. 1107266Domain d1k2db1: 1k2d B:93-190 [84293]
    Other proteins in same PDB: d1k2da1, d1k2da2, d1k2db2
    complexed with nag, ndg

Details for d1k2db1

PDB Entry: 1k2d (more details), 2.2 Å

PDB Description: Crystal structure of the autoimmune MHC class II I-Au complexed with myelin basic protein 1-11 at 2.2A
PDB Compounds: (B:) H-2 class II histocompatibility antigen, A-U beta chain

SCOPe Domain Sequences for d1k2db1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1k2db1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}
rleqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngd
wtfqvlvmlemtprrgevytchvehpslkspitvewra

SCOPe Domain Coordinates for d1k2db1:

Click to download the PDB-style file with coordinates for d1k2db1.
(The format of our PDB-style files is described here.)

Timeline for d1k2db1:

View in 3D
Domains from same chain:
(mouse over for more information)
d1k2db2