SCOPe 2.08: Protein: Topoisomerase VI-B subunit

Lineage for Protein: Topoisomerase VI-B subunit

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.122: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55873] (1 superfamily)
8-stranded mixed beta-sheet; 2 layers: alpha/beta
Superfamily d.122.1: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55874] (5 families)
Family d.122.1.2: DNA gyrase/MutL, N-terminal domain [55879] (7 proteins)
Protein Topoisomerase VI-B subunit [82778] (1 species)
contains an H2TH domain inserted after this domain and before the second family-specific domain

Species:

Sulfolobus shibatae [TaxId:2286] [82779] (7 PDB entries)
1. Domain for 1mu5:
  - Domain d1mu5a3: 1mu5 A:10-228 [79474]
    Other proteins in same PDB: d1mu5a1, d1mu5a2
    complexed with ca
2. Domains for 1mx0:
  1. Domain d1mx0a3: 1mx0 A:4-228 [79620]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
  2. Domain d1mx0b3: 1mx0 B:4-228 [79623]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
  3. Domain d1mx0c3: 1mx0 C:4-228 [79626]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
  4. Domain d1mx0d3: 1mx0 D:4-228 [79629]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
  5. Domain d1mx0e3: 1mx0 E:4-228 [79632]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
  6. Domain d1mx0f3: 1mx0 F:4-228 [79635]
    Other proteins in same PDB: d1mx0a1, d1mx0a2, d1mx0b1, d1mx0b2, d1mx0c1, d1mx0c2, d1mx0d1, d1mx0d2, d1mx0e1, d1mx0e2, d1mx0f1, d1mx0f2
    complexed with anp, mg, na
3. Domain for 1z59:
  - Domain d1z59a3: 1z59 A:9-228 [124457]
    Other proteins in same PDB: d1z59a1, d1z59a2
    automated match to d2hkja3
    complexed with adp, mg
4. Domains for 1z5a:
  1. Domain d1z5aa3: 1z5a A:4-228 [124460]
    Other proteins in same PDB: d1z5aa1, d1z5aa2, d1z5ab1, d1z5ab2
    automated match to d2hkja3
    complexed with adp, mg
  2. Domain d1z5ab3: 1z5a B:4-228 [124463]
    Other proteins in same PDB: d1z5aa1, d1z5aa2, d1z5ab1, d1z5ab2
    automated match to d2hkja3
    complexed with adp, mg
5. Domains for 1z5b:
  1. Domain d1z5ba3: 1z5b A:4-228 [124466]
    Other proteins in same PDB: d1z5ba1, d1z5ba2, d1z5bb1, d1z5bb2
    automated match to d2hkja3
    complexed with adp, alf, mg, so4
  2. Domain d1z5bb3: 1z5b B:4-228 [124469]
    Other proteins in same PDB: d1z5ba1, d1z5ba2, d1z5bb1, d1z5bb2
    automated match to d2hkja3
    complexed with adp, alf, mg, so4
6. Domains for 1z5c:
  1. Domain d1z5ca3: 1z5c A:4-228 [124472]
    Other proteins in same PDB: d1z5ca1, d1z5ca2, d1z5cb1, d1z5cb2
    automated match to d2hkja3
    complexed with adp, mg, po4
  2. Domain d1z5cb3: 1z5c B:4-228 [124475]
    Other proteins in same PDB: d1z5ca1, d1z5ca2, d1z5cb1, d1z5cb2
    automated match to d2hkja3
    complexed with adp, mg, po4
7. Domain for 2hkj:
  - Domain d2hkja3: 2hkj A:10-228 [136555]
    Other proteins in same PDB: d2hkja1, d2hkja2
    automated match to d2hkja3
    complexed with dms, mg, rdc

More info for Protein Topoisomerase VI-B subunit from d.122.1.2: DNA gyrase/MutL, N-terminal domain

Timeline for Protein Topoisomerase VI-B subunit from d.122.1.2: DNA gyrase/MutL, N-terminal domain:

Protein Topoisomerase VI-B subunit from d.122.1.2: DNA gyrase/MutL, N-terminal domain first appeared in SCOP 1.63, called Protein Topoisomerase IV-B subunit from d.122.1.2: DNA gyrase/MutL, N-terminal domain
Protein Topoisomerase VI-B subunit from d.122.1.2: DNA gyrase/MutL, N-terminal domain appears in SCOPe 2.07