SCOPe 2.08: Family c.116.1.3: YbeA-like

Lineage for Family c.116.1.3: YbeA-like

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.3: YbeA-like [82371] (5 proteins)
   Pfam PF02590

Proteins:

1. Hypothetical protein SAV0024/SA0023 [102276] (1 species)

   • Species Staphylococcus aureus [TaxId:1280] [102277] (1 PDB entry)

2. Hypothetical protein TM0844 [102274] (1 species)

   • Species Thermotoga maritima [TaxId:2336] [102275] (1 PDB entry)

3. Hypothetical protein YbeA [82372] (1 species)

   • Species Escherichia coli [TaxId:562] [82373] (1 PDB entry)

4. Hypothetical protein YydA [110497] (1 species)

   • Species Bacillus subtilis [TaxId:1423] [110498] (1 PDB entry)
     Uniprot Q45601

5. automated matches [195222] (2 species)
   not a true protein

   1. Species Escherichia coli [TaxId:562] [333863] (2 PDB entries)

   2. Species Staphylococcus aureus [TaxId:1280] [195223] (1 PDB entry)

More info for Family c.116.1.3: YbeA-like

Timeline for Family c.116.1.3: YbeA-like:

• Family c.116.1.3: YbeA-like first appeared in SCOP 1.63
  
• Family c.116.1.3: YbeA-like appears in SCOPe 2.07