SCOP 1.71: Protein: N-acyl-D-aminoacid amidohydrolase, catalytic domain

Lineage for Protein: N-acyl-D-aminoacid amidohydrolase, catalytic domain

Root: SCOP 1.71
Class c: Alpha and beta proteins (a/b) [51349] (134 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (32 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.9: Metallo-dependent hydrolases [51556] (13 families)
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.11: D-aminoacylase, catalytic domain [82264] (1 protein)
Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain [82265] (1 species)
contains small a/b subdomain inserted after strand 7; unusual for the superfamily metal coordination by Cys

Species:

Alcaligenes faecalis [TaxId:511] [82266] (8 PDB entries)
1. Domain for 1m7j:
  - Domain d1m7ja3: 1m7j A:62-419 [78734]
    Other proteins in same PDB: d1m7ja1, d1m7ja2
    complexed with act, zn
2. Domain for 1rjp:
  - Domain d1rjpa3: 1rjp A:62-419 [97574]
    Other proteins in same PDB: d1rjpa1, d1rjpa2
    complexed with act, cu, zn2
3. Domain for 1rjq:
  - Domain d1rjqa3: 1rjq A:62-419 [97577]
    Other proteins in same PDB: d1rjqa1, d1rjqa2
    complexed with act, zn2; mutant
4. Domain for 1rjr:
  - Domain d1rjra3: 1rjr A:62-419 [97580]
    Other proteins in same PDB: d1rjra1, d1rjra2
    complexed with act, zn2; mutant
5. Domain for 1rk5:
  - Domain d1rk5a3: 1rk5 A:62-419 [97598]
    Other proteins in same PDB: d1rk5a1, d1rk5a2
    complexed with act, cu, zn2; mutant
6. Domain for 1rk6:
  - Domain d1rk6a3: 1rk6 A:62-419 [97601]
    Other proteins in same PDB: d1rk6a1, d1rk6a2
    complexed with act, cd, zn2
7. Domain for 1v4y:
  - Domain d1v4ya3: 1v4y A:62-419 [100317]
    Other proteins in same PDB: d1v4ya1, d1v4ya2
    complexed with act, zn2; mutant
8. Domain for 1v51:
  - Domain d1v51a3: 1v51 A:62-419 [100320]
    Other proteins in same PDB: d1v51a1, d1v51a2
    complexed with act, zn2

More info for Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain

Timeline for Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain:

Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain first appeared in SCOP 1.63, called Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalitic domain
Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain appears in SCOP 1.69
Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain appears in SCOP 1.73
Protein N-acyl-D-aminoacid amidohydrolase, catalytic domain from c.1.9.11: D-aminoacylase, catalytic domain appears in the current release, SCOPe 2.08