Lineage for Species: Paramecium bursaria chorella virus type 1, PBCV-1

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 304390Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 304410Superfamily b.121.2: Group II dsDNA viruses VP [49749] (3 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. 304440Family b.121.2.3: Major capsid protein vp54 [82013] (1 protein)
  6. 304441Protein Major capsid protein vp54 [82014] (1 species)
  7. 304442Species Paramecium bursaria chorella virus type 1, PBCV-1 [82015] (2 PDB entries)
    a large, lipid-containing, DNA virus

PDB entries in Species: Paramecium bursaria chorella virus type 1, PBCV-1:

  1. Domain(s) for 1j5q:
    1. 304451Domain d1j5qa1: 1j5q A:25-221 [77084]
    2. 304452Domain d1j5qa2: 1j5q A:222-437 [77085]
    3. 304453Domain d1j5qb1: 1j5q B:25-221 [77086]
    4. 304454Domain d1j5qb2: 1j5q B:222-437 [77087]
      complexed with hg, man, nag
  2. Domain(s) for 1m3y:
    1. 304443Domain d1m3ya1: 1m3y A:25-221 [78579]
    2. 304444Domain d1m3ya2: 1m3y A:222-437 [78580]
    3. 304445Domain d1m3yb1: 1m3y B:25-221 [78581]
    4. 304446Domain d1m3yb2: 1m3y B:222-437 [78582]
    5. 304447Domain d1m3yc1: 1m3y C:25-221 [78583]
    6. 304448Domain d1m3yc2: 1m3y C:222-437 [78584]
    7. 304449Domain d1m3yd1: 1m3y D:25-221 [78585]
    8. 304450Domain d1m3yd2: 1m3y D:222-437 [78586]
      complexed with hg, man, nag

More info for Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.121.2.3 Major capsid protein vp54

Timeline for Species Paramecium bursaria chorella virus type 1, PBCV-1 from b.121.2.3 Major capsid protein vp54: