SCOPe 2.03: Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Lineage for Species: Norway rat (Rattus norvegicus) [TaxId: 10116]

Root: SCOPe 2.03
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
Superfamily d.218.1: Nucleotidyltransferase [81301] (15 families)
Family d.218.1.2: DNA polymerase beta-like [81300] (4 proteins)
insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
Protein DNA polymerase beta, catalytic (31 kD) fragment [81578] (2 species)
Species Norway rat (Rattus norvegicus) [TaxId:10116] [81576] (20 PDB entries)

PDB entries in Species: Norway rat (Rattus norvegicus) [TaxId: 10116]:

Domain(s) for 1bpb:
- Domain d1bpba2: 1bpb A:149-335 [75812]
  Other proteins in same PDB: d1bpba1
Domain(s) for 1bpd:
- Domain d1bpda3: 1bpd A:149-335 [75814]
  Other proteins in same PDB: d1bpda1, d1bpda2
  complexed with po4
Domain(s) for 1bpe:
- Domain d1bpea3: 1bpe A:149-335 [75816]
  Other proteins in same PDB: d1bpea1, d1bpea2
  complexed with dtp
Domain(s) for 1huo:
1. Domain d1huoa4: 1huo A:149-334 [75847]
  Other proteins in same PDB: d1huoa1, d1huoa3, d1huob1, d1huob3
  protein/DNA complex; complexed with cr, tte
2. Domain d1huob4: 1huo B:149-334 [75849]
  Other proteins in same PDB: d1huoa1, d1huoa3, d1huob1, d1huob3
  protein/DNA complex; complexed with cr, tte
Domain(s) for 1huz:
1. Domain d1huza4: 1huz A:149-334 [75851]
  Other proteins in same PDB: d1huza1, d1huza3, d1huzb1, d1huzb3
  protein/DNA complex; complexed with cr, mdn
2. Domain d1huzb4: 1huz B:149-334 [75853]
  Other proteins in same PDB: d1huza1, d1huza3, d1huzb1, d1huzb3
  protein/DNA complex; complexed with cr, mdn
Domain(s) for 1jn3:
- Domain d1jn3a2: 1jn3 A:149-335 [75865]
  Other proteins in same PDB: d1jn3a1
  mutant
Domain(s) for 1nom:
- Domain d1noma2: 1nom A:149-335 [75930]
  Other proteins in same PDB: d1noma1
  complexed with mn
Domain(s) for 1rpl:
- Domain d1rpla2: 1rpl A:149-335 [75934]
  Other proteins in same PDB: d1rpla1
Domain(s) for 1zqu:
- Domain d1zqua2: 1zqu A:149-335 [75976]
  Other proteins in same PDB: d1zqua1
Domain(s) for 1zqv:
- Domain d1zqva2: 1zqv A:149-335 [75978]
  Other proteins in same PDB: d1zqva1
  complexed with ca
Domain(s) for 1zqw:
- Domain d1zqwa2: 1zqw A:149-335 [75980]
  Other proteins in same PDB: d1zqwa1
Domain(s) for 1zqx:
- Domain d1zqxa2: 1zqx A:149-335 [75982]
  Other proteins in same PDB: d1zqxa1
Domain(s) for 1zqy:
- Domain d1zqya2: 1zqy A:149-335 [75984]
  Other proteins in same PDB: d1zqya1
Domain(s) for 1zqz:
- Domain d1zqza2: 1zqz A:149-335 [75986]
  Other proteins in same PDB: d1zqza1
  complexed with mn
Domain(s) for 2bpc:
- Domain d2bpca2: 2bpc A:149-335 [75990]
  Other proteins in same PDB: d2bpca1
  complexed with mn
Domain(s) for 2bpf:
- Domain d2bpfa4: 2bpf A:149-335 [75992]
  Other proteins in same PDB: d2bpfa1, d2bpfa3
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2bpg:
1. Domain d2bpga4: 2bpg A:149-335 [75994]
  Other proteins in same PDB: d2bpga1, d2bpga3, d2bpgb1, d2bpgb3
  protein/DNA complex; complexed with dct, mg
2. Domain d2bpgb4: 2bpg B:149-335 [75996]
  Other proteins in same PDB: d2bpga1, d2bpga3, d2bpgb1, d2bpgb3
  protein/DNA complex; complexed with dct, mg
Domain(s) for 2van:
- Domain d2vana2: 2van A:149-335 [152827]
  Other proteins in same PDB: d2vana1
  automatically matched to d1bpba2
Domain(s) for 3k75:
1. Domain d3k75d2: 3k75 D:149-338 [232695]
  Other proteins in same PDB: d3k75d1, d3k75e1
  automated match to d1zqwa2
2. Domain d3k75e2: 3k75 E:149-335 [232696]
  Other proteins in same PDB: d3k75d1, d3k75e1
  automated match to d1zqwa2
Domain(s) for 3uxn:
1. Domain d3uxna3: 3uxn A:149-334 [217566]
  Other proteins in same PDB: d3uxna1, d3uxna2, d3uxnb1, d3uxnb2
  automated match to d1huza4
2. Domain d3uxnb3: 3uxn B:149-334 [217569]
  Other proteins in same PDB: d3uxna1, d3uxna2, d3uxnb1, d3uxnb2
  automated match to d1huza4

More info for Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment

Timeline for Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment:

Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment first appeared in SCOP 1.63, called Species Rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment
Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment appears in SCOPe 2.02
Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment appears in SCOPe 2.04
Species Norway rat (Rattus norvegicus) [TaxId:10116] from d.218.1.2 DNA polymerase beta, catalytic (31 kD) fragment appears in the current release, SCOPe 2.08