SCOPe 2.06: Protein: Class sigma GST

Lineage for Protein: Class sigma GST

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
Superfamily c.47.1: Thioredoxin-like [52833] (24 families)
Family c.47.1.5: Glutathione S-transferase (GST), N-terminal domain [52862] (19 proteins)
Protein Class sigma GST [81362] (5 species)

Species:

Fruit fly (Drosophila melanogaster) [TaxId:7227] [82427] (1 PDB entry)
- Domains for 1m0u:
  1. Domain d1m0ua2: 1m0u A:47-122 [78360]
    Other proteins in same PDB: d1m0ua1, d1m0ub1
    complexed with gsh, so4
  2. Domain d1m0ub2: 1m0u B:47-122 [78362]
    Other proteins in same PDB: d1m0ua1, d1m0ub1
    complexed with gsh, so4

Heligmosomoides polygyrus [TaxId:6339] [110608] (1 PDB entry)
Uniprot Q9NJQ6 # Fragment

Domains for 1tw9:

Domain d1tw9a2: 1tw9 A:3-77 [107382]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9b2: 1tw9 B:3-77 [107384]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9c2: 1tw9 C:3-77 [107386]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9d2: 1tw9 D:3-77 [107388]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9e2: 1tw9 E:3-77 [107390]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9f2: 1tw9 F:3-77 [107392]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9g2: 1tw9 G:3-77 [107394]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Domain d1tw9h2: 1tw9 H:3-77 [107396]
Other proteins in same PDB: d1tw9a1, d1tw9a3, d1tw9b1, d1tw9b3, d1tw9c1, d1tw9c3, d1tw9d1, d1tw9d3, d1tw9e1, d1tw9e3, d1tw9f1, d1tw9f3, d1tw9g1, d1tw9g3, d1tw9h1, d1tw9h3

Human (Homo sapiens) [TaxId:9606] [89705] (7 PDB entries)
Uniprot O60760
synonym: hematopoietic prostaglandin D synthase
1. Domains for 1iyh:
  1. Domain d1iyha2: 1iyh A:2-75 [83791]
    Other proteins in same PDB: d1iyha1, d1iyhb1, d1iyhc1, d1iyhd1
    complexed with gsh, mg
  2. Domain d1iyhb2: 1iyh B:202-275 [83793]
    Other proteins in same PDB: d1iyha1, d1iyhb1, d1iyhc1, d1iyhd1
    complexed with gsh, mg
  3. Domain d1iyhc2: 1iyh C:402-475 [83795]
    Other proteins in same PDB: d1iyha1, d1iyhb1, d1iyhc1, d1iyhd1
    complexed with gsh, mg
  4. Domain d1iyhd2: 1iyh D:602-675 [83797]
    Other proteins in same PDB: d1iyha1, d1iyhb1, d1iyhc1, d1iyhd1
    complexed with gsh, mg
2. Domains for 1iyi:
  1. Domain d1iyia2: 1iyi A:2-75 [83799]
    Other proteins in same PDB: d1iyia1, d1iyib1, d1iyic1, d1iyid1
    complexed with ca, gsh
  2. Domain d1iyib2: 1iyi B:202-275 [83801]
    Other proteins in same PDB: d1iyia1, d1iyib1, d1iyic1, d1iyid1
    complexed with ca, gsh
  3. Domain d1iyic2: 1iyi C:402-475 [83803]
    Other proteins in same PDB: d1iyia1, d1iyib1, d1iyic1, d1iyid1
    complexed with ca, gsh
  4. Domain d1iyid2: 1iyi D:602-675 [83805]
    Other proteins in same PDB: d1iyia1, d1iyib1, d1iyic1, d1iyid1
    complexed with ca, gsh
3. Domains for 1v40:
  1. Domain d1v40a2: 1v40 A:2-75 [113513]
    Other proteins in same PDB: d1v40a1, d1v40b1, d1v40c1, d1v40d1
    complexed with gol, gsh, mg, o16
  2. Domain d1v40b2: 1v40 B:202-275 [113515]
    Other proteins in same PDB: d1v40a1, d1v40b1, d1v40c1, d1v40d1
    complexed with gol, gsh, mg, o16
  3. Domain d1v40c2: 1v40 C:402-475 [113517]
    Other proteins in same PDB: d1v40a1, d1v40b1, d1v40c1, d1v40d1
    complexed with gol, gsh, mg, o16
  4. Domain d1v40d2: 1v40 D:602-675 [113519]
    Other proteins in same PDB: d1v40a1, d1v40b1, d1v40c1, d1v40d1
    complexed with gol, gsh, mg, o16
4. Domains for 2cvd:
  1. Domain d2cvda2: 2cvd A:2-75 [130862]
    Other proteins in same PDB: d2cvda1, d2cvdb1, d2cvdc1, d2cvdd1
    automated match to d1iyha2
    complexed with gol, gsh, hql, mg
  2. Domain d2cvdb2: 2cvd B:2-75 [130864]
    Other proteins in same PDB: d2cvda1, d2cvdb1, d2cvdc1, d2cvdd1
    automated match to d1iyha2
    complexed with gol, gsh, hql, mg
  3. Domain d2cvdc2: 2cvd C:2-75 [130866]
    Other proteins in same PDB: d2cvda1, d2cvdb1, d2cvdc1, d2cvdd1
    automated match to d1iyha2
    complexed with gol, gsh, hql, mg
  4. Domain d2cvdd2: 2cvd D:2-75 [130868]
    Other proteins in same PDB: d2cvda1, d2cvdb1, d2cvdc1, d2cvdd1
    automated match to d1iyha2
    complexed with gol, gsh, hql, mg
5. Domains for 3ee2:
  1. Domain d3ee2a2: 3ee2 A:2-75 [158118]
    Other proteins in same PDB: d3ee2a1, d3ee2b1
    automated match to d1pd212
    complexed with gsh, mg, nzo
  2. Domain d3ee2b2: 3ee2 B:2-75 [158120]
    Other proteins in same PDB: d3ee2a1, d3ee2b1
    automated match to d1pd212
    complexed with gsh, mg, nzo
6. Domains for 3vi5:
  1. Domain d3vi5a1: 3vi5 A:2-75 [217828]
    Other proteins in same PDB: d3vi5a2, d3vi5b2, d3vi5c2, d3vi5d2
    automated match to d1iyha2
    complexed with ca, gol, gsh, m4m
  2. Domain d3vi5b1: 3vi5 B:202-275 [217830]
    Other proteins in same PDB: d3vi5a2, d3vi5b2, d3vi5c2, d3vi5d2
    automated match to d1iyha2
    complexed with ca, gol, gsh, m4m
  3. Domain d3vi5c1: 3vi5 C:402-475 [217832]
    Other proteins in same PDB: d3vi5a2, d3vi5b2, d3vi5c2, d3vi5d2
    automated match to d1iyha2
    complexed with ca, gol, gsh, m4m
  4. Domain d3vi5d1: 3vi5 D:602-675 [217834]
    Other proteins in same PDB: d3vi5a2, d3vi5b2, d3vi5c2, d3vi5d2
    automated match to d1iyha2
    complexed with ca, gol, gsh, m4m
7. Domains for 3vi7:
  1. Domain d3vi7a1: 3vi7 A:2-75 [217836]
    Other proteins in same PDB: d3vi7a2, d3vi7b2, d3vi7c2, d3vi7d2
    automated match to d1iyha2
    complexed with ca, cbd, gsh
  2. Domain d3vi7b1: 3vi7 B:202-275 [217838]
    Other proteins in same PDB: d3vi7a2, d3vi7b2, d3vi7c2, d3vi7d2
    automated match to d1iyha2
    complexed with ca, cbd, gsh
  3. Domain d3vi7c1: 3vi7 C:402-475 [217840]
    Other proteins in same PDB: d3vi7a2, d3vi7b2, d3vi7c2, d3vi7d2
    automated match to d1iyha2
    complexed with ca, cbd, gsh
  4. Domain d3vi7d1: 3vi7 D:602-675 [217842]
    Other proteins in same PDB: d3vi7a2, d3vi7b2, d3vi7c2, d3vi7d2
    automated match to d1iyha2
    complexed with ca, cbd, gsh
Norway rat (Rattus norvegicus) [TaxId:10116] [52875] (1 PDB entry)
synonym: hematopoietic prostaglandin D synthase
- Domains for 1pd2:
  1. Domain d1pd212: 1pd2 1:1-75 [33007]
    Other proteins in same PDB: d1pd211, d1pd221
    complexed with gsh
  2. Domain d1pd222: 1pd2 2:1-75 [33008]
    Other proteins in same PDB: d1pd211, d1pd221
    complexed with gsh
Squid (Ommastrephes sloani pacificus) [TaxId:6634] [52876] (2 PDB entries)
1. Domain for 1gsq:
  - Domain d1gsqa2: 1gsq A:1-75 [33010]
    Other proteins in same PDB: d1gsqa1
    complexed with gdn
2. Domain for 2gsq:
  - Domain d2gsqa2: 2gsq A:1-75 [33009]
    Other proteins in same PDB: d2gsqa1
    complexed with gbi, so4

More info for Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain

Timeline for Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain:

Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain first appeared in SCOP 1.63
Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain appears in SCOPe 2.05
Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain appears in SCOPe 2.07
Protein Class sigma GST from c.47.1.5: Glutathione S-transferase (GST), N-terminal domain appears in the current release, SCOPe 2.08