Lineage for d1ngzb1 (1ngz B:1-114)

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1103261Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1103262Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1103263Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1103461Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1103919Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88552] (152 PDB entries)
    Uniprot P01756 1-117 # 78% sequense identity; HV12_MOUSE Ig heavy chain V region MOPC 104E ! SQ NA # humanized antibody ! Uniprot P01750 # HV06_MOUSE Ig heavy chain V region 102 precursor ! Uniprot P01750 20-116 # ! HV06_MOUSE Ig heavy chain V region 102 precursor
  8. 1104113Domain d1ngzb1: 1ngz B:1-114 [80502]
    Other proteins in same PDB: d1ngza1, d1ngza2, d1ngzb2
    part of metal chelatase catalytic Fab 7G12; chimeric germline antibody

Details for d1ngzb1

PDB Entry: 1ngz (more details), 1.6 Å

PDB Description: Chimeric Germline Fab 7g12-apo
PDB Compounds: (B:) Germline Metal Chelatase Catalytic Antibody, Heavy chain

SCOPe Domain Sequences for d1ngzb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ngzb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
qvqllesgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtky
nekfkskatltvdkpsstaymqlssltsedsavyyctrrdsdywgagttvtvss

SCOPe Domain Coordinates for d1ngzb1:

Click to download the PDB-style file with coordinates for d1ngzb1.
(The format of our PDB-style files is described here.)

Timeline for d1ngzb1:

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Domains from same chain:
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d1ngzb2