SCOPe 2.07: Domain d1k9da1: 1k9d A:143-679

Lineage for d1k9da1 (1k9d A:143-679)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.10: alpha-D-glucuronidase/Hyaluronidase catalytic domain [82253] (4 proteins)
   Glycosyl hydrolase family 67, GH67; structurally related to GH20; contains extra C-terminal alpha-helical subdomain

6. Protein alpha-D-glucuronidase catalytic domain [82254] (2 species)
   inverting reaction mechanism

7. Species Bacillus stearothermophilus [TaxId:1422] [82256] (7 PDB entries)

8. Domain d1k9da1: 1k9d A:143-679 [77292]
   Other proteins in same PDB: d1k9da2
   complexed with gol

Details for d1k9da1

PDB Entry: 1k9d, 1.7 Å

PDB Description: The 1.7 A crystal structure of alpha-D-glucuronidase, a family-67 glycoside hydrolase from Bacillus stearothermophilus T-1

PDB Compounds: (A:) alpha-d-glucuronidase

SCOPe Domain Sequences for d1k9da1:

Sequence, based on SEQRES records:

>d1k9da1 c.1.8.10 (A:143-679) alpha-D-glucuronidase catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
rlrminhwdnmdgsiergyagrsiffvddqfvkqnqrikdyarllasvginaisinnvnv
hktetklitdhflpdvaevadifrtygiktflsinyaspieigglptadpldpevrwwwk
etakriyqyipdfggfvvkadsefrpgpftygrdhaeganmlaealapfgglviwrcfvy
ncqqdwrdrttdrakaaydhfkpldgqfrenvilqikngpmdfqvrepvsplfgampktn
qmmevqitqeytgqqkhlcflipqwkevldfdtyakgkgsevkkvidgslfdyrysgiag
vsnigsdpnwtghtlaqanlygfgrlawnpdlsaeeianewvvqtfgddsqvvetiswml
lsswriyenytsplgvgwmvnpghhygpnvdgyeyshwgtyhyadrdgigvdrtvatgtg
ytaqyfpenaamyesldtcpdelllffhhvpythrlhsgetviqhiynthfegveqakql
rkrweqlkgkidekryhdvlerltiqvehakewrdvintyfyrksgiddqygrkiyr

Sequence, based on observed residues (ATOM records):

>d1k9da1 c.1.8.10 (A:143-679) alpha-D-glucuronidase catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
rlrminhwdnmdgsiergyagrsiffvddqfvkqnqrikdyarllasvginaisinnvnv
hktetklitdhflpdvaevadifrtygiktflsinyaspieigglptadpldpevrwwwk
etakriyqyipdfggfvvkapgpftygrdhaeganmlaealapfgglviwrcfvyncqqd
wrdrttdrakaaydhfkpldgqfrenvilqikngpmdfqvrepvsplfgampktnqmmev
qitqeytgqqkhlcflipqwkevldfdtyakgkgsevkkvidgslfdyrysgiagvsnig
sdpnwtghtlaqanlygfgrlawnpdlsaeeianewvvqtfgddsqvvetiswmllsswr
iyenytsplgvgwmvnpghhygpnvdgyeyshwgtyhyadrdgigvdrtvatgtgytaqy
fpenaamyesldtcpdelllffhhvpythrlhsgetviqhiynthfegveqakqlrkrwe
qlkgkidekryhdvlerltiqvehakewrdvintyfyrksgiddqygrkiyr

Timeline for d1k9da1:

• d1k9da1 first appeared in SCOP 1.63
  
• d1k9da1 appears in SCOPe 2.06
  
• d1k9da1 appears in the current release, SCOPe 2.08