Lineage for d1j5qb2 (1j5q B:222-437)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 304390Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 304410Superfamily b.121.2: Group II dsDNA viruses VP [49749] (3 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. 304440Family b.121.2.3: Major capsid protein vp54 [82013] (1 protein)
  6. 304441Protein Major capsid protein vp54 [82014] (1 species)
  7. 304442Species Paramecium bursaria chorella virus type 1, PBCV-1 [82015] (2 PDB entries)
    a large, lipid-containing, DNA virus
  8. 304454Domain d1j5qb2: 1j5q B:222-437 [77087]
    complexed with hg, man, nag

Details for d1j5qb2

PDB Entry: 1j5q (more details), 2.55 Å

PDB Description: the structure and evolution of the major capsid protein of a large, lipid-containing, dna virus.

SCOP Domain Sequences for d1j5qb2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1j5qb2 b.121.2.3 (B:222-437) Major capsid protein vp54 {Paramecium bursaria chorella virus type 1, PBCV-1}

SCOP Domain Coordinates for d1j5qb2:

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Timeline for d1j5qb2:

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