Lineage for d1j5qb1 (1j5q B:25-221)

  1. Root: SCOPe 2.06
  2. 2021373Class b: All beta proteins [48724] (177 folds)
  3. 2086376Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2086428Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. 2086488Family b.121.2.3: Major capsid protein vp54 [82013] (2 proteins)
  6. 2086489Protein Major capsid protein vp54 [82014] (1 species)
  7. 2086490Species Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId:10506] [82015] (2 PDB entries)
    a large, lipid-containing, DNA virus
  8. 2086501Domain d1j5qb1: 1j5q B:25-221 [77086]
    complexed with hg, man, nag, ndg

Details for d1j5qb1

PDB Entry: 1j5q (more details), 2.55 Å

PDB Description: the structure and evolution of the major capsid protein of a large, lipid-containing, dna virus.
PDB Compounds: (B:) Major capsid protein

SCOPe Domain Sequences for d1j5qb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1j5qb1 b.121.2.3 (B:25-221) Major capsid protein vp54 {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

SCOPe Domain Coordinates for d1j5qb1:

Click to download the PDB-style file with coordinates for d1j5qb1.
(The format of our PDB-style files is described here.)

Timeline for d1j5qb1:

View in 3D
Domains from same chain:
(mouse over for more information)