SCOP 1.63: Domain d1gz0d1: 1gz0 D:78-243

Lineage for d1gz0d1 (1gz0 D:78-243)

1. Root: SCOP 1.63

2. Class c: Alpha and beta proteins (a/b) [51349] (117 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (3 families)
   known or predicted SAM-dependent methytransferases; all known members have dimeric structures

5. Family c.116.1.1: SpoU-like RNA 2'-O ribose methyltransferase [75218] (3 proteins)
   contains extra strand (3) in the parallel beta-sheet, order 321546

6. Protein RlmB, C-terminal domain [82376] (1 species)
   23S rRNA G2251 2'O-methytransferase

7. Species Escherichia coli [TaxId:562] [82377] (1 PDB entry)

8. Domain d1gz0d1: 1gz0 D:78-243 [76397]
   Other proteins in same PDB: d1gz0a2, d1gz0b2, d1gz0c2, d1gz0d2, d1gz0f2, d1gz0h2

Details for d1gz0d1

PDB Entry: 1gz0, 2.5 Å

PDB Description: 23s ribosomal rna g2251 2'o-methyltransferase rlmb

SCOP Domain Sequences for d1gz0d1:

Sequence; same for both SEQRES and ATOM records:

>d1gz0d1 c.116.1.1 (D:78-243) RlmB, C-terminal domain {Escherichia coli}
rqyqendlpdliasldqpfllildgvtdphnlgaclrsadaagvhavivpkdrsaqlnat
akkvacgaaesvplirvtnlartmrmlqeeniwivgtageadhtlyqskmtgrlalvmga
egegmrrltrehcdelisipmagsvsslnvsvatgiclfeavrqrs

Timeline for d1gz0d1:

• d1gz0d1 is new in SCOP 1.63
  
• d1gz0d1 appears in SCOP 1.65
  
• d1gz0d1 appears in the current release, SCOPe 2.08