SCOPe 2.06: Domain d1lb4a1: 1lb4 A:348-504

Lineage for d1lb4a1 (1lb4 A:348-504)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.8: TRAF domain-like [49598] (1 superfamily)
   sandwich; 8 strands in 2 sheets; greek-key

4. Superfamily b.8.1: TRAF domain-like [49599] (3 families)
   has a circularly permuted immunoglobulin-fold topology with extra strand

5. Family b.8.1.1: MATH domain [49600] (5 proteins)
   automatically mapped to Pfam PF00917

6. Protein TNF receptor associated factor 6 (TRAF6) [74883] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [74884] (3 PDB entries)

8. Domain d1lb4a1: 1lb4 A:348-504 [73796]
   Other proteins in same PDB: d1lb4a2

Details for d1lb4a1

PDB Entry: 1lb4, 2.4 Å

PDB Description: traf6 apo structure

PDB Compounds: (A:) TNF receptor-associated factor 6

SCOPe Domain Sequences for d1lb4a1:

Sequence, based on SEQRES records:

>d1lb4a1 b.8.1.1 (A:348-504) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
qcngiyiwkignfgmhlkcqeeekpvvihspgfytgkpgyklcmrlhlqlptaqrcanyi
slfvhtmqgeydshlpwpfqgtirltildqseapvrqnheeimdakpellafqrptiprn
pkgfgyvtfmhlealrqrtfikddtllvrcevstrfd

Sequence, based on observed residues (ATOM records):

>d1lb4a1 b.8.1.1 (A:348-504) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
qcngiyiwkignfgmhlkcqeeekpvvihspgfytgkpgyklcmrlhlqlptaqrcanyi
slfvhtmqgeydshlpwpfqgtirltildqseapvrqnheeimdakpellafqrptikgf
gyvtfmhlealrqrtfikddtllvrcevstrfd

Timeline for d1lb4a1:

• d1lb4a1 first appeared in SCOP 1.61, called d1lb4a_
  
• d1lb4a1 was called d1lb4a_ in SCOPe 2.05
  
• d1lb4a1 appears in SCOPe 2.07
  
• d1lb4a1 appears in the current release, SCOPe 2.08