Lineage for d1ktrl_ (1ktr L:)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287841Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (98 PDB entries)
  8. 287907Domain d1ktrl_: 1ktr L: [72993]
    Other proteins in same PDB: d1ktrh_
    part of scFv 3d5
    mutant

Details for d1ktrl_

PDB Entry: 1ktr (more details), 2.7 Å

PDB Description: crystal structure of the anti-his tag antibody 3d5 single-chain fragment (scfv) in complex with a oligohistidine peptide

SCOP Domain Sequences for d1ktrl_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ktrl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
dilmtqtpsslpvslgdqasiscrssqsivhsngntylewylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyycfqgshvpftfgsgtkleikr

SCOP Domain Coordinates for d1ktrl_:

Click to download the PDB-style file with coordinates for d1ktrl_.
(The format of our PDB-style files is described here.)

Timeline for d1ktrl_:

View in 3D
Domains from other chains:
(mouse over for more information)
d1ktrh_