SCOPe 2.08: Domain d1gkib_: 1gki B:

Lineage for d1gkib_ (1gki B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (22 proteins)
   core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest

6. Protein Bacterial conjugative coupling protein TrwB [69492] (1 species)

7. Species Escherichia coli [TaxId:562] [69493] (5 PDB entries)

8. Domain d1gkib_: 1gki B: [70222]
   complexed with adp, epe, mg
   has additional subdomain(s) that are not in the common domain

Details for d1gkib_

PDB Entry: 1gki, 3 Å

PDB Description: plasmid coupling protein trwb in complex with adp and mg2+.

PDB Compounds: (B:) conjugal transfer protein trwb

SCOPe Domain Sequences for d1gkib_:

Sequence, based on SEQRES records:

>d1gkib_ c.37.1.11 (B:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
svgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngat
gtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneir
ndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfd
dlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggn
lfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladalt
kgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslge
heverdryskntgkhhstgralervrervvmpaeianlpdltayvgfagnrpiakvplei
kqfanrqpafve

Sequence, based on observed residues (ATOM records):

>d1gkib_ c.37.1.11 (B:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
svgqgefggapfkrflrgtrivsggklkrmtrekakqvtvagvpmprdaeprhllvngat
gtgksvllrelaytgllrgdrmvivdpngdmlskfgrdkdiilnpydqrtkgwsffneir
ndydwqryalsvvprgktdeaeewasygrlllretakklaligtpsmrelfhwttiatfd
dlrgflegtlaeslfagsneaskaltsarfvlsdklpehvtmpdgdfsirswledpnggn
lfitwredmgpalrplisawvdvvctsilslpeepkrrlwlfidelasleklasladalt
kgrkaglrvvaglqstsqlddvygvkeaqtlrasfrslvvlggsrtdpktnedmslslge
heverdrervrervvmpaeianlpdltayvgfagnrpiakvpleikqfanrqpafve

Timeline for d1gkib_:

• d1gkib_ first appeared in SCOP 1.61
  
• d1gkib_ appears in SCOPe 2.07