SCOPe 2.06: Domain d1kmka_: 1kmk A:

Lineage for d1kmka_ (1kmk A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.3: Cystathionine synthase-like [53402] (17 proteins)

6. Protein NifS-like protein/selenocysteine lyase [53412] (3 species)

7. Species Escherichia coli [TaxId:562] [53414] (5 PDB entries)
   gene product CsdB

8. Domain d1kmka_: 1kmk A: [68696]
   complexed with plp, sec

Details for d1kmka_

PDB Entry: 1kmk, 2.2 Å

PDB Description: e. coli nifs/csdb protein at 2.20a with the cysteine perselenide intermediate (residue csz).

PDB Compounds: (A:) selenocysteine lyase

SCOPe Domain Sequences for d1kmka_:

Sequence; same for both SEQRES and ATOM records:

>d1kmka_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}
ifsvdkvradfpvlsrevnglplayldsaasaqkpsqvidaeaefyrhgyaavhrgihtl
saqatekmenvrkraslfinarsaeelvfvrgtteginlvanswgnsnvragdniiisqm
ehhanivpwqmlcarvgaelrviplnpdgtlqletlptlfdektrllaithvsnvlgten
plaemitlahqhgakvlvdgaqavmhhpvdvqaldcdfyvfsghklygptgigilyvkea
llqemppwegggsmiatvslsegttwtkapwrfeagtpntggiiglgaaleyvsalglnn
iaeyeqnlmhyalsqlesvpdltlygpqnrlgviafnlgkhhaydvgsfldnygiavrtg
hhcamplmayynvpamcraslamyntheevdrlvtglqrihrllg

Timeline for d1kmka_:

• d1kmka_ first appeared in SCOP 1.59
  
• d1kmka_ appears in SCOPe 2.05
  
• d1kmka_ appears in SCOPe 2.07
  
• d1kmka_ appears in the current release, SCOPe 2.08