SCOPe 2.06: Domain d1k83e1: 1k83 E:3-143

Lineage for d1k83e1 (1k83 E:3-143)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.3: Eukaryotic RPB5 N-terminal domain [53036] (1 family)

5. Family c.52.3.1: Eukaryotic RPB5 N-terminal domain [53037] (2 proteins)

6. Protein Eukaryotic RPB5 N-terminal domain [53038] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [53039] (26 PDB entries)
   Uniprot P20434; part of multichain biological unit

8. Domain d1k83e1: 1k83 E:3-143 [68279]
   Other proteins in same PDB: d1k83a_, d1k83b_, d1k83c1, d1k83c2, d1k83e2, d1k83f_, d1k83h_, d1k83i1, d1k83i2, d1k83j_, d1k83k_, d1k83l_
   protein/DNA complex; protein/RNA complex; complexed with mn, zn

Details for d1k83e1

PDB Entry: 1k83, 2.8 Å

PDB Description: Crystal Structure of Yeast RNA Polymerase II Complexed with the Inhibitor Alpha Amanitin

PDB Compounds: (E:) DNA-directed RNA polymerase II 27kd polypeptide

SCOPe Domain Sequences for d1k83e1:

Sequence; same for both SEQRES and ATOM records:

>d1k83e1 c.52.3.1 (E:3-143) Eukaryotic RPB5 N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
qenernisrlwrafrtvkemvkdrgyfitqeevelpledfkakycdsmgrpqrkmmsfqa
npteesiskfpdmgslwvefcdepsvgvktmktfvihiqeknfqtgifvyqnnitpsamk
lvpsippatietfneaalvvn

Timeline for d1k83e1:

• d1k83e1 first appeared in SCOP 1.59
  
• d1k83e1 appears in SCOPe 2.05
  
• d1k83e1 appears in SCOPe 2.07
  
• d1k83e1 appears in the current release, SCOPe 2.08