Lineage for d1jp5b1 (1jp5 B:1-112)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 287095Fold b.1: Immunoglobulin-like beta-sandwich [48725] (20 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 287096Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 287097Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (21 proteins)
  6. 287738Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogeneous CDRs are listed as engineered species
  7. 287841Species Mouse (Mus musculus), cluster 1.1 [TaxId:10090] [88524] (98 PDB entries)
  8. 287935Domain d1jp5b1: 1jp5 B:1-112 [67003]
    Other proteins in same PDB: d1jp5a2, d1jp5b2
    part of scFv 1695; complexed with the epitope peptide from HIV-1 protease

Details for d1jp5b1

PDB Entry: 1jp5 (more details), 2.7 Å

PDB Description: Crystal structure of the single-chain Fv fragment 1696 in complex with the epitope peptide corresponding to N-terminus of HIV-1 protease

SCOP Domain Sequences for d1jp5b1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1jp5b1 b.1.1.1 (B:1-112) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1}
dilmtqtplylpvslgdqasiscrssqtivhnngntylewylqkpgqspqlliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgiyycfqgshfpptfgggtkleik

SCOP Domain Coordinates for d1jp5b1:

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Timeline for d1jp5b1:

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d1jp5b2