SCOP 1.73: Domain d1i8ma1: 1i8m A:1-107

Lineage for d1i8ma1 (1i8m A:1-107)

1. Root: SCOP 1.73

2. Class b: All beta proteins [48724] (165 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (27 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (4 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (29 proteins)

6. Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
   VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species

7. Species Mouse (Mus musculus), cluster 4 [TaxId:10090] [88531] (181 PDB entries)

8. Domain d1i8ma1: 1i8m A:1-107 [66082]
   Other proteins in same PDB: d1i8ma2, d1i8mb1, d1i8mb2, d1i8mh1, d1i8mh2, d1i8ml2
   part of anti-ssDNA Fab
   complexed with so4

Details for d1i8ma1

PDB Entry: 1i8m, 2.1 Å

PDB Description: crystal structure of a recombinant anti-single-stranded dna antibody fragment complexed with dt5

PDB Compounds: (A:) antibody light chain fab

SCOP Domain Sequences for d1i8ma1:

Sequence; same for both SEQRES and ATOM records:

>d1i8ma1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
elqmtqspaslsasvgetvtitcraseniysylawyqqkqgkspqllvynaktlaegvps
rfsgsgsgtqfslkinslqpedfgsyycqhhygtpltfgagtklelk

Timeline for d1i8ma1:

• d1i8ma1 first appeared in SCOP 1.59
  
• d1i8ma1 appears in SCOP 1.71
  
• d1i8ma1 appears in SCOP 1.75
  
• d1i8ma1 appears in the current release, SCOPe 2.08