SCOPe 2.02: Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Lineage for Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Root: SCOPe 2.02
Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
Fold d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
Superfamily d.185.1: LuxS/MPP-like metallohydrolase [63411] (2 families)
Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues

Family d.185.1.1: MPP-like [63412] (6 proteins)
Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal

Protein Mitochondrial processing peptidase (MPP) beta chain [64300] (1 species)
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64301] (4 PDB entries)

PDB entries in Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]:

Domain(s) for 1hr6:
1. Domain d1hr6b1: 1hr6 B:24-245 [61166]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
2. Domain d1hr6b2: 1hr6 B:246-462 [61167]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
3. Domain d1hr6d1: 1hr6 D:20-245 [61170]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
4. Domain d1hr6d2: 1hr6 D:246-462 [61171]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
5. Domain d1hr6f1: 1hr6 F:20-245 [61174]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
6. Domain d1hr6f2: 1hr6 F:246-462 [61175]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
7. Domain d1hr6h1: 1hr6 H:23-245 [61178]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
8. Domain d1hr6h2: 1hr6 H:246-462 [61179]
  Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6e1, d1hr6e2, d1hr6g1, d1hr6g2
  complexed with epe, zn
Domain(s) for 1hr7:
1. Domain d1hr7b1: 1hr7 B:24-245 [61182]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
2. Domain d1hr7b2: 1hr7 B:246-462 [61183]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
3. Domain d1hr7d1: 1hr7 D:22-245 [61186]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
4. Domain d1hr7d2: 1hr7 D:246-462 [61187]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
5. Domain d1hr7f1: 1hr7 F:23-245 [61190]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
6. Domain d1hr7f2: 1hr7 F:246-462 [61191]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
7. Domain d1hr7h1: 1hr7 H:23-245 [61194]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
8. Domain d1hr7h2: 1hr7 H:246-462 [61195]
  Other proteins in same PDB: d1hr7a1, d1hr7a2, d1hr7c1, d1hr7c2, d1hr7e1, d1hr7e2, d1hr7g1, d1hr7g2
  complexed with zn; mutant
Domain(s) for 1hr8:
1. Domain d1hr8b1: 1hr8 B:24-245 [61198]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
2. Domain d1hr8b2: 1hr8 B:246-462 [61199]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
3. Domain d1hr8d1: 1hr8 D:20-245 [61202]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
4. Domain d1hr8d2: 1hr8 D:246-462 [61203]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
5. Domain d1hr8f1: 1hr8 F:20-245 [61206]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
6. Domain d1hr8f2: 1hr8 F:246-462 [61207]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
7. Domain d1hr8h1: 1hr8 H:22-245 [61210]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
8. Domain d1hr8h2: 1hr8 H:246-462 [61211]
  Other proteins in same PDB: d1hr8a1, d1hr8a2, d1hr8c1, d1hr8c2, d1hr8e1, d1hr8e2, d1hr8g1, d1hr8g2
  complexed with epe, zn; mutant
Domain(s) for 1hr9:
1. Domain d1hr9b1: 1hr9 B:24-245 [61214]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
2. Domain d1hr9b2: 1hr9 B:246-462 [61215]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
3. Domain d1hr9d1: 1hr9 D:22-245 [61218]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
4. Domain d1hr9d2: 1hr9 D:246-462 [61219]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
5. Domain d1hr9f1: 1hr9 F:20-245 [61222]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
6. Domain d1hr9f2: 1hr9 F:246-462 [61223]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
7. Domain d1hr9h1: 1hr9 H:23-245 [61226]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant
8. Domain d1hr9h2: 1hr9 H:246-462 [61227]
  Other proteins in same PDB: d1hr9a1, d1hr9a2, d1hr9c1, d1hr9c2, d1hr9e1, d1hr9e2, d1hr9g1, d1hr9g2
  complexed with epe, zn; mutant

More info for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain

Timeline for Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain:

Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain first appeared in SCOP 1.57
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain appears in SCOPe 2.01
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain appears in SCOPe 2.03
Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] from d.185.1.1 Mitochondrial processing peptidase (MPP) beta chain appears in the current release, SCOPe 2.08