SCOPe 2.01: Species: Thermococcus profundus [TaxId: 49899]

Lineage for Species: Thermococcus profundus [TaxId: 49899]

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (11 proteins)
extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein Glutamate dehydrogenase [51884] (8 species)
Species Thermococcus profundus [TaxId:49899] [63943] (1 PDB entry)

PDB entry in Species: Thermococcus profundus [TaxId: 49899]:

Domain(s) for 1euz:
1. Domain d1euza1: 1euz A:181-419 [59513]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4
2. Domain d1euzb1: 1euz B:181-419 [59515]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4
3. Domain d1euzc1: 1euz C:181-419 [59517]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4
4. Domain d1euzd1: 1euz D:181-419 [59519]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4
5. Domain d1euze1: 1euz E:181-419 [59521]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4
6. Domain d1euzf1: 1euz F:181-419 [59523]
  Other proteins in same PDB: d1euza2, d1euzb2, d1euzc2, d1euzd2, d1euze2, d1euzf2
  complexed with so4

More info for Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase

Timeline for Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase:

Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase first appeared in SCOP 1.57, called Species Archaeon Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase
Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase was called Species Archaeon Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase in SCOP 1.75
Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase appears in SCOPe 2.02
Species Thermococcus profundus [TaxId:49899] from c.2.1.7 Glutamate dehydrogenase appears in the current release, SCOPe 2.08