SCOPe 2.05: Family c.1.8.8: 1,4-beta-N-acetylmuraminidase

Lineage for Family c.1.8.8: 1,4-beta-N-acetylmuraminidase

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.8: 1,4-beta-N-acetylmuraminidase [63912] (4 proteins)
   Glycosyl hydrolase family 25; probably have evolved from a type II chitinase ancestor
   permutation of the common fold; strand 8 is antiparallel to the rest of the barrel

Proteins:

1. N-terminal domain of endolysin [89484] (1 species)
   • Species Bacteriophage cp-1 [TaxId:10747] [89485] (2 PDB entries)

2. Streptomyces lysozyme [63913] (1 species)
   supersedes and corrects the old structure from S. erythraeus; 0LZ6

   • Species Streptomyces coelicolor, "mueller" dsm3030 [TaxId:1902] [63914] (1 PDB entry)

3. Unnamed hypothetical protein [102082] (1 species)
   homologue of BH2215 from the complete Bacillus halodurans genome

   • Species Bacillus stearothermophilus [TaxId:1422] [102083] (1 PDB entry)

4. automated matches [254544] (2 species)
   not a true protein

   1. Species Bacteriophage cp-1 [TaxId:10747] [255251] (2 PDB entries)

   2. Species Streptococcus phage [TaxId:10747] [255246] (2 PDB entries)

More info for Family c.1.8.8: 1,4-beta-N-acetylmuraminidase

Timeline for Family c.1.8.8: 1,4-beta-N-acetylmuraminidase:

• Family c.1.8.8: 1,4-beta-N-acetylmuraminidase first appeared in SCOP 1.57
  
• Family c.1.8.8: 1,4-beta-N-acetylmuraminidase appears in SCOPe 2.04
  
• Family c.1.8.8: 1,4-beta-N-acetylmuraminidase appears in SCOPe 2.06
  
• Family c.1.8.8: 1,4-beta-N-acetylmuraminidase appears in the current release, SCOPe 2.08